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qPharmetra / qpToolkit

Tools for population PK modeling, visualization, and reporting
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analysis notebook template looks for missing file #71

Open bergsmat opened 4 years ago

bergsmat commented 4 years ago

The analysis notebook rmd calls ModelReportChild.Rmd, which calls nm.params.table(run,path = nm.path). The third argument to nm.params.table() is file.ext = ".ext", and has not changed recently. On knit, I see 

outPar = nm.params.table(run,path = nm.path)
cannot open file '/usr/local/lib/R/site-library/qpToolkit/NONMEM/Example1/Example1.ext': 
No such file or directoryError in file(file, "r") : cannot open the connection

and indeed Example1.ext is not present. Should it be?