Installing the querynator=0.3.3 in a conda environment from the bioconda channel with python=3.9 will result in ModuleNotFoundError: No module named 'civicpy' error. The site-packages of civicpy are not correctly installed when using bioconda.
However, if it is installed via pip or from bioconda with python=3.10 it will work. Also the biocontainer quay.io/biocontainers/querynator:0.3.3--pyh7cba7a3_0 is working fine.
Description of the bug
Installing the
querynator=0.3.3in a conda environment from the bioconda channel withpython=3.9will result inModuleNotFoundError: No module named 'civicpy'error. The site-packages ofcivicpyare not correctly installed when using bioconda. However, if it is installed viapipor frombiocondawithpython=3.10it will work. Also the biocontainerquay.io/biocontainers/querynator:0.3.3--pyh7cba7a3_0is working fine.Command used and terminal output
No response
System information
The issues were reproducible on CentOS and macOS.