Civic api

[mapo9]

PR Checklist

• [x] This comment contains a description of changes (with reason)
• [ ] Referenced issue is linked
• [ ] If you've fixed a bug or added code that should be tested, add tests!
• [x] Documentation in docs is updated
• [x] CHANGELOG.rst is updated

Description of changes

• added functionality to query CIViC DB
• made gzipped files queryable for CGI
• updated Docs

[github-actions[bot]]

This PR is against the master branch :x:

• Do not close this PR
• Click Edit and change the base to dev
• This CI test will remain failed until you push a new commit

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Hi @mapo9,

It looks like this pull-request is has been made against the mapo9/querynator master branch. The master branch on qbic-pipelines repositories should always contain code from the latest release. Because of this, PRs to master are only allowed if they come from the mapo9/querynator dev branch.

You do not need to close this PR, you can change the target branch to dev by clicking the "Edit" button at the top of this page. Note that even after this, the test will continue to show as failing until you push a new commit.

Thanks again for your contribution!

[SusiJo]

Is the empty file querynator/cli_tools/cli_civic.py needed? If not, please delete it.

[SusiJo]

Please check the formatting according to the linting

[SusiJo]

Could you please also add a query-api-civic test for the cli?

[SusiJo]

Concerning tests: it would be really useful to have a dummy input files for each API query which can be used for testing to see how the output looks like. Could you think of solutions like creating a folder with tiny test input and output files?

[SusiJo]

Have you run black . && isort .? This should fix the remaining linting errors