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qbic-pipelines / rnadeseq

Differential gene expression analysis and pathway analysis of RNAseq data
MIT License
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Include background gene list for pathway analysis #201

Closed ggabernet closed 1 year ago

ggabernet commented 1 year ago

Description of feature

As described in the following threads, pathway analysis should use a list of background genes, that are the expressed genes in the analyzed samples:

https://twitter.com/mdziemann/status/1626407797939384320

https://twitter.com/mdziemann/status/1628566886161223681

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009935

WackerO commented 1 year ago

Closing with #202