Use --relevel parameter for PCA plotting

qbic-pipelines / rnadeseq

Differential gene expression analysis and pathway analysis of RNAseq data

MIT License

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Use --relevel parameter for PCA plotting #222

Open qbicStefanC opened 10 months ago

qbicStefanC commented 10 months ago

Description of feature

The --relevelparameter in rnadeseq is primarily there for modeling in DE analysis ( i assume/recall). I just noticed that it has no influence on the ordering of the sample labels in the PCA plot. Expected behaviour would be that the releveling is also used for releveling of the factor levels in the PCA plot (although not that straightfoward because of the implemented combfactor , which is -in contrast- not used for DE analysis.

qbicStefanC commented 5 months ago

Leave this open until the next release.

Stefan.