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qbic-pipelines / root-tissue-analysis

Pipeline for pH analysis of A. thaliana root tissue
MIT License
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Correct class color coding in report #24

Closed luiskuhn closed 1 year ago

luiskuhn commented 2 years ago

in the jupyter notebook, under "Image Ouput Visualization", the class IDs should be: background (0), root tissue (1), early elongation zone (2), late elongation zone (3), and meristematic zone (4).

https://github.com/qbic-pipelines/root-tissue-analysis/blob/dev/modules/containers/rtsstat/reporting.ipynb

luiskuhn commented 1 year ago

This has been fixed here: https://github.com/qbic-pipelines/root-tissue-analysis/pull/21