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qc17-THU / rDL-SIM

A Tensorflow implementation of rationalized deep learning (rDL) based image denoising for microscopy images
MIT License
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About biosr preprocessing #1

Open Luchixiang opened 2 years ago

Luchixiang commented 2 years ago

Hi! Thank you for your awesome code. I want to know how to preprocess the biosr dataset to run your code? It seems like that the preprocessing code is missed. Thank you.

yourshadow258 commented 1 year ago

maybe I have same problem.....

qc17-THU commented 1 year ago

Hi! Thank you for your appreciation. The MATLAB codes for preprocessing the BioSR dataset have been published in another repo: https://github.com/qc17-THU/DL-SR/tree/main/data_agmt_matlab, and the augmented data via these codes can be used to train the SR inference module. The training data for rDL denoising module are augmented from the raw SIM images of low/high SNR via random cropping, which can be realized by slightly modifying the released MATLAB codes. Also, for convenience I'll re-arrange and upload related codes for data augmentation in this repository recently.