qdu-bioinfo / hrms

R package for making the kernel functions of calculating the microbiome distances and principle coordinates.
GNU General Public License v3.0
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Package installation failure #2

Open tranheim opened 1 year ago

tranheim commented 1 year ago

Hi! I wanted to use the HRMS package but fail to install it in both r and in standalone mode, using MacOS Ventura. I suspect the failure has to do with the OpenMP issue and I have tried to work around this but not succeeded.

Below is a paste of the failure message appearing when attempting to install in R

clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Users/tden0001/Library/R/x86_64/4.2/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppEigen/include' -I/usr/local/include -fopenmp -O3 -Wno-deprecated -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o

Do you have any suggestions for how to proceed with this?

Cheers Tord