Error running SAGA fill sink (wang&liu)

deepnpisgah commented 2 years ago

What is the bug or the crash?

QGIS version: 3.24.1-Tisler QGIS code revision: 9d1e5b189a Qt version: 5.15.2 Python version: 3.9.5 GDAL version: 3.3.2 GEOS version: 3.9.1-CAPI-1.14.2 PROJ version: Rel. 8.1.1, September 1st, 2021 PDAL version: 2.3.0 (git-version: Release) Algorithm started at: 2022-03-25T11:24:35 Algorithm 'Fill sinks (wang & liu)' starting… Input parameters: { 'ELEV' : '/Volumes/10_TB-2020/QGIS_Projects/ClipCathyDEM.tif', 'FDIR' : '/Volumes/10_TB-2020/QGIS_Projects/CathyFlowDir.sdat', 'FILLED' : '/Volumes/10_TB-2020/QGIS_Projects/CathyFillSinks.sdat', 'MINSLOPE' : 0.01, 'WSHED' : '/Volumes/10_TB-2020/QGIS_Projects/CathyWatershed.sdat' }

io_gdal 0 -TRANSFORM 1 -RESAMPLING 3 -GRIDS "/Volumes/10_TB-2020/qgis/tmp/processing_QoyQtS/d646b8003a2842f09d3ed44ade7bd6c9/ClipCathyDEM.sgrd" -FILES "/Volumes/10_TB-2020/QGIS_Projects/ClipCathyDEM.tif" ta_preprocessor "Fill Sinks (Wang & Liu)" -ELEV "/Volumes/10_TB-2020/qgis/tmp/processing_QoyQtS/d646b8003a2842f09d3ed44ade7bd6c9/ClipCathyDEM.sgrd" -MINSLOPE 0.01 -FILLED "/Volumes/10_TB-2020/QGIS_Projects/CathyFillSinks.sdat" -FDIR "/Volumes/10_TB-2020/QGIS_Projects/CathyFlowDir.sdat" -WSHED "/Volumes/10_TB-2020/QGIS_Projects/CathyWatershed.sdat" dyld: Symbol not found: __ZN20wireless_diagnostics6google8protobuf2io16CodedInputStream24default_recursion_limit_E Referenced from: /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libprotobuf.dylib Expected in: /Applications/QGIS.app/Contents/MacOS/lib/libprotobuf-lite.dylib in /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libprotobuf.dylib /Applications/QGIS.app/Contents/MacOS/bin/saga_cmd: line 9: 73081 Abort trap: 6 "$THISDIR/_saga_cmd" "$@" dyld: Symbol not found: __ZN20wireless_diagnostics6google8protobuf2io16CodedInputStream24default_recursion_limit_E Referenced from: /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libprotobuf.dylib Expected in: /Applications/QGIS.app/Contents/MacOS/lib/libprotobuf-lite.dylib in /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libprotobuf.dylib /Applications/QGIS.app/Contents/MacOS/bin/saga_cmd: line 9: 73086 Abort trap: 6 "$THISDIR/_saga_cmd" "$@" Execution completed in 0.36 seconds

Steps to reproduce the issue

Trying to use SAGA tools 'fill sink (wang & liu). Choose a DEM raster, take default minimum slope = 0.010

error on dyld: Symbol not found: __ZN20wireless_diagnostics6google8protobuf2io16CodedInputStream24default_recursion_limit_E Referenced from: /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libprotobuf.dylib Expected in: /Applications/QGIS.app/Contents/MacOS/lib/libprotobuf-lite.dylib in /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libprotobuf.dylib /Applications/QGIS.app/Contents/MacOS/bin/saga_cmd: line 9: 73081 Abort trap: 6 "$THISDIR/_saga_cmd" "$@" dyld: Symbol not found: __ZN20wireless_diagnostics6google8protobuf2io16CodedInputStream24default_recursion_limit_E Referenced from: /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libprotobuf.dylib Expected in: /Applications/QGIS.app/Contents/MacOS/lib/libprotobuf-lite.dylib in /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libprotobuf.dylib /Applications/QGIS.app/Contents/MacOS/bin/saga_cmd: line 9: 73086 Abort trap: 6 "$THISDIR/_saga_cmd" "$@"

Versions

QGIS version	3.24.1-Tisler	QGIS code revision	9d1e5b189a
Qt version	5.15.2
Python version	3.9.5
GDAL/OGR version	3.3.2
PROJ version	8.1.1
EPSG Registry database version	v10.028 (2021-07-07)
GEOS version	3.9.1-CAPI-1.14.2
SQLite version	3.35.2
PDAL version	2.3.0
PostgreSQL client version	unknown
SpatiaLite version	5.0.1
QWT version	6.1.6
QScintilla2 version	2.11.5
OS version	macOS Mojave (10.14)

QGIS version 3.24.1-Tisler QGIS code revision 9d1e5b189a Qt version 5.15.2 Python version 3.9.5 GDAL/OGR version 3.3.2 PROJ version 8.1.1 EPSG Registry database version v10.028 (2021-07-07) GEOS version 3.9.1-CAPI-1.14.2 SQLite version 3.35.2 PDAL version 2.3.0 PostgreSQL client version unknown SpatiaLite version 5.0.1 QWT version 6.1.6 QScintilla2 version 2.11.5 OS version macOS Mojave (10.14)

Active Python plugins numericalDigitize 0.4.6 QuickOSM 2.0.1 profiletool 4.2.2 lines_ranking 1.0 quick_map_services 0.19.29 Hy2roresO-master 0.0.1 LAStools 1.4 SRTM-Downloader 3.1.17 latlontools 3.6.2 qfieldsync v4.0.0 qgis_resource_sharing 0.16.0 pointsamplingtool 0.5.3 GroupStats 2.2.5 processing 2.12.99 sagaprovider 2.12.99 grassprovider 2.12.99 db_manager 0.1.20 MetaSearch 0.3.6

Supported QGIS version

[X] I'm running a supported QGIS version according to the roadmap.

New profile

[ ] I tried with a new QGIS profile

Additional context

System Version: macOS 10.14.6 (18G103) Kernel Version: Darwin 18.7.0

previously had trouble with RASTER clip to layer and had to adjust multiple symlinks in QGIS lib directory due to other missing symbol errors

ln -s /System/Library/Frameworks/ImageIO.framework/Resources/libJPEG.dylib libjpeg.dylib ln -s /System/Library/Frameworks/ImageIO.framework/Resources/libTIFF.dylib libtiff.dylib ln -s /System/Library/Frameworks/ImageIO.framework/Resources/libpng.dylib libtpng.dylib ln -s ./local/Cellar/sqlite/3.38.1/lib/libsqlite3.dylib libsqlite3.dylib

alexbruy commented 2 years ago

Looks like MacOS packaging issue or maybe a result of the symlinks you have created. Does SAGA works if you run it from command line directly?

deepnpisgah commented 2 years ago

I will try from command line. Without the symlinks the GDAL processing fails prior to SAGA. I need the GDAL files to get to the SAGA processing parts.

deepnpisgah commented 2 years ago

I was unable to run from cmd line, segmentation fault.

Now the odd part...

I restarted QGIS and was able to run the Fill and Sink. no issues When I tried to Channel Network and Drainage Basins I get again the same error , symbol not found in libproto I restarted QGIS again and no errors.

I can try a fresh install of QGIS again and see about recreating.

alexbruy commented 2 years ago

Then it is most likely local issue.

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