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what's the difference between the "NCyc_100_2019Jul" and "NCyc_100.faa"? #20

Open dangchenyuan opened 3 years ago

dangchenyuan commented 3 years ago

As mentioned in the title, I want to annotate the N genes in some MAGs, if I can use the ORF predicted from prodigal? And I want to know the difference between the two databases. Before use, are they must be unzipped?

qichao1984 commented 3 years ago

  1. "NCyc_100_2019Jul" fixed a few potential mistakes in "NCyc_100.faa", please use "NCyc_100_2019Jul" for better accuracy.

  2. Yes, in order to find N-cycling genes in MAGs, ORFs should be used.

  4. Yes, they should be unzipped, because github do not support large files.

From: dangchenyuan @.> Sent: Thursday, September 2, 2021 2:18 PM To: qichao1984/NCyc @.> Cc: Subscribed @.***> Subject: [qichao1984/NCyc] what's the difference between the "NCyc_100_2019Jul" and "NCyc_100.faa"? (#20)

As mentioned in the title, I want to annotate the N genes in some MAGs, if I can use the ORF predicted from prodigal? And I want to know the difference between the two databases. Before use, are they must be unzipped?

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