Duplicate prokmsa ids

[ElDeveloper]

Selecting all the studies listed below, will print the following traceback in the web portal. The meta-analysis is only trying to create an OTU table and a mapping file nothing else:

Submitted Meta-Analyses: 
    • Job 103383: COMPLETED_ERROR 
    • 
    • Output: Traceback (most recent call last): 
        File "/home/wwwuser//git/qiime_web_app/python_code/scripts/make_mapping_file_and_otu_table.py",

        line 89, in main() 
            File "/home/wwwuser//git/qiime_web_app/python_code/scripts/make_mapping_file_and_otu_table.py",
        line 86, in main jobs_to_start,taxonomy,tree_fp)
            File "/home/wwwuser/git/qiime_web_app/python_code/generate_mapping_and_otu_table.py",
        line 521, in write_mapping_and_otu_table otu_table_file_dir_db)
            File "/home/wwwuser/git/qiime_web_app/python_code/generate_mapping_and_otu_table.py",
        line 561, in write_otu_table
            raise ValueError, 'Duplicate prokmsa ids! - %s ' % sample_name1 ValueError: Duplicate prokmsa ids! - P.C.7.1.414758

The selected studies are the following:

• Ballor_saline_environments
• Berry_MA_pond_sediment_profiles
• Biddle_Ocean_Drilling_Program_Leg_201
• Biddle_Pavilion_Lake_microbialite
• Bowatte_NZ_FreeAirCarbonEnrichment
• Brazelton_Serpentinite_Seeps
• CaporasoIlluminaPNAS2011_5prime
• Caporaso_Glen_Canyon_soils
• Caporaso_illumina_time_series
• Caporaso_yellowstone_gradients
• Cary_NZTABS_antarctic_soil
• Catlin_Arctic_Survey_2010_L3
• Chu_Changbai_mountain_soils
• Chu_tibetan_lake_sediments
• Delsuc_microbi_ant
• Dubinsky_Hawaii_Kohala
• Ercolini_ObeseSaliva
• Ezenwa_Cape_Buffalo
• Forsman_swallow_egg_nest
• Friedman_arctic_peat_soil
• Gasser_MWC_catchment_microbes
• Gilbert_Bergen_mesocosm
• Gittel_CryoCARB_2_permafrost
• Grossart_German_lake_water_sediment
• Haig_WaterPurif_temp_spat
• Hofmockel_TempleTX_native_exotic_ppt_soils
• Hulth_Gullmarfjord_sediment
• Hultman_Geochemical_Landscapes_permafrost
• Jansson_Alaskan_fire_chrono_Tanana
• Jansson_LDRD_Biological_Carbon_Sequestration
• Jansson_Polluted_Polar_Coastal_Sediments
• Jurelevicius_Brazilian_Antarctic_contaminated_soils
• Jurelevicius_Rio_de_Janeiro_Coastline
• Jurelivicius_Antarctic_cleanup
• King_Kilauea_geothermal
• Knight_IQBIO_2013
• LaRoche_EPOCA_Svalbard2010_mesocosm
• Lipson_ice_wedge_polygon
• MacRaeCrerar_Mongolia_soil
• McMahon_MendotaLake_timeseries
• McMahon_Temperate_Bog_Lakes
• Metcalf_SanDiegoZoo_folivorus_primate
• Moore_Yucatan_cenotes
• MorganKiss_Dry_Valley_Lake_communities
• Myrold_Alder_Fir
• Myrold_Oregon_transect
• NEON_soils_EMP_Pilot
• Neufeld_Craibstone_pH_study_soil
• Peralta_birds
• Peralta_starlings
• Pfister_Intertidal_microbe_16s
• Rao_Thar_desert_microbes
• Rees_VulcanoIsland_seawaterMedSeA
• Robinson_English_ChannelL4_time_series_2009_2010
• Rockne_GreatLakesmicrobialdiversity
• Rohwer_Mission_Bay_sediment_viromes
• SKennedy_Cannabis_soils
• Spirito_Monensin_Cow_Hindgut
• Thomas_CMB_Australia_kelp_soi
• Wehrle_Panama_iguana-

---

@wdwvt1 originally tried to create this meta-analysis. I was able to take a look at the mapping file that was generated but there was no OTU table. The total number of samples is around 15,000.

[ElDeveloper]

@wdwvt1 and @douginator2000 this issue seems to be resolved right?

[douginator2000]

As far as I'm aware, it's fixed.

On Thu, Aug 8, 2013 at 8:12 AM, Yoshiki Vázquez Baeza < notifications@github.com> wrote:

@wdwvt1 https://github.com/wdwvt1 and @douginator2000https://github.com/douginator2000this issue seems to be resolved right?

— Reply to this email directly or view it on GitHubhttps://github.com/qiime/qiime_web_app/issues/487#issuecomment-22325987 .

Doug Wendel Professional Research Associate University of Colorado at Boulder Department of Chemistry and Biochemistry, Knight Lab 303-641-5442 wendel@colorado.edu

[ElDeveloper]

Sweet! :shipit: