search

qiime2 / docs

https://docs.qiime2.org
BSD 3-Clause "New" or "Revised" License
21 stars 58 forks source link

MAINT: `cluster-features-denovo` tutorial needs new `--p-strand` param added #574

Open lizgehret opened 6 months ago

lizgehret commented 6 months ago

The 2024.2 release included the following API change to cluster-features-denovo: https://github.com/qiime2/q2-vsearch/pull/90

The vsearch tutorial should be updated to include the newly added --p-strand parameter.

@colinvwood this would be a good one to have @hagenjp work on while I'm OOO.

hagenjp commented 5 months ago

Hi @lizgehret, since this is an optional parameter that we are exposing and we do not have a use case in the tutorials for the non-default "both" option, is there any reason why this parameter should be added in the vsearch tutorial?

lizgehret commented 5 months ago

Hey @hagenjp - in the tutorial, you can include the default --p-strand parameter in the cluster-features-denovo commands, then include a bit of text that describes the non-default use-case. This should be added because it keeps our tutorial up to date with the associated API change!