Addresses replay review comments

[ChrisKeefe]

• [x] citation deduplication
• [x] consistent formatting for fields in Python rendering - went with syntax error instead of str
• [x] fix multiline comments in python rendering
• [x] lint python with vscode - either clean up in usage, or consider auto-formatting with black or autopep8
• [x] fix action_collection_size behavior, so core-metrics looks better
• [ ] check BASH syntax is correct at start of script run if possible
• [x] lint/look over CLI scripts in an editor with good syntax support - issues should be easy to find
• [x] Clean up spacing of both scripts, but especially CLI
• [x] CLI tab completion
• [x] recursive globbing needs to be optional
• [x] header block with suppress-header option, showing how-to including conda activate
• [x] shebangs
• [x] CLI replay must provide filler --o-output flags for all expected outputs
• [x] Python replay should probably check for nonexistent parameters and flag for users
• [x] Python replay needs to render .save() lines, so users can run non-interactively

closes #58 closes #59