ebolyen
commented
1 year ago We need to migrate the types from q2-stats before we merge this.
I almost forgot about that because the CI is perfectly happy with everything as it isn't aware of distros at this stage of the pipeline.
New method in q2-composition that wraps the ANCOM-BC functionality from this R package. I used some of @mortonjt's ideas from his q2-ancombc plugin, but added some additional guards, and have wrapped up the outputs differently. The contents of this PR include:
New method ancombc that produces an artifact containing the following: LFC (log fold change) w scores std err p-vals q-vals
Unit test suite and usage examples for ancombc method
Visualizer for the DataLoafPackageDirFmt that is an output of the ANCOM-BC wrapper method within q2-composition. This visualizer provides tab separated views for each dataframe containing the log-fold change (lfc), standard error (se), P and Q values, and W scores.