qiime2 / q2-composition

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bug: tabulate viz & testing/usage examples #99

Closed lizgehret closed 1 year ago

lizgehret commented 1 year ago

This PR fixes a couple of small bugs, and adds some additional testing.

The following bugs have been fixed:

The following tests have been added:

Some additional misc. items within this PR include:

lizgehret commented 1 year ago

Here is what the updated output & resultant viz looks like:

Screen Shot 2023-01-04 at 5 29 12 PM

lizgehret commented 1 year ago

Okay I think this is ready for a final review @ebolyen - I'm going to open a separate PR for the usage example that includes back ticks in the formula once I have #100 sorted, but the rest of this should be all set.

lizgehret commented 1 year ago

Note: the dataloaf output's index has been changed from feature-id to id since we are discouraging the use of dashes in metadata columns when using ancombc (due to the issues mentioned above).