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qiime2 / q2-cutadapt

BSD 3-Clause "New" or "Revised" License
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Convert --verbose stats to visualization #19

Open ebolyen opened 6 years ago

ebolyen commented 6 years ago

Improvement Description Convert --verbose stats to visualization

Questions

  1. Is it possible to have metadata in-between like DADA2 or would this just become a visualization directly?
ebolyen commented 6 years ago

forum x-ref

lina-kim commented 7 months ago

Six years later, another update! Native Cutadapt has an --info-file flag that outputs a TSV (much more machine-readable) with adapter output. Though sadly this functionality is not yet available for paired-end runs.

Edit: Unsure if this is worth a separate issue entirely, but I grouped here for the sake of "more output statements".

gregcaporaso commented 7 months ago

The .tsv file would almost certainly be able to be read into an artifact with semantic type ImmutableMetadata, though this would be a backward incompatible change (because we don't have optional outputs) so we'd want to just give a heads-up on the forum one release cycle in advance if we implement this.