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qiime2 / q2-dada2

QIIME 2 plugin wrapping DADA2
BSD 3-Clause "New" or "Revised" License
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Create report visualizer #79

Closed thermokarst closed 6 years ago

thermokarst commented 6 years ago

Related to #77

Convert stdout read fraction report to a visualization.

ebolyen commented 6 years ago

forum x-ref

nbokulich commented 6 years ago

forum xref

ebolyen commented 6 years ago

forum x-ref

ebolyen commented 6 years ago

forum x-ref

benjjneb commented 6 years ago

This information is straightforward to write out from the R side, as long as there is a defined file format to use. My assumption is that is the way to go, since it sounds like you want that information as an artifact that can be visualized with other Q2 functions?

ebolyen commented 6 years ago

Yup! I think our plan at this point is to write it out as something like SampleData[DADA2Stats] or similar. This would be an artifact viewable as metadata and could be used with qiime metadata tabulate or wherever else metadata can be used. The only real work will be mapping the filepaths to sample IDs, but that's very simple also.