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add procrustes method #120

Closed gregcaporaso closed 6 years ago

gregcaporaso commented 7 years ago

I think this should take two PCoA matrices (say pcoa-a and pcoa-b) as input, and output one PCoA matrix, where the output matrix is the pcoa-b transformed to minimize differences against pcoa-a.

ElDeveloper commented 7 years ago

Is there a timeline for this, I would like to make sure that this feature exists in Emperor before this is planned to exist.

jairideout commented 7 years ago

We're planning to add it in the 2017.9 release. Does that timeline work for you?

ElDeveloper commented 7 years ago

Yes, I think this should work!!

On (Aug-22-17| 1:44), Jai Ram Rideout wrote:

We're planning to add it in the 2017.9 release. Does that timeline work for you?

-- You are receiving this because you commented. Reply to this email directly or view it on GitHub: https://github.com/qiime2/q2-diversity/issues/120#issuecomment-323896116

jairideout commented 7 years ago

Cool! Get in touch with us on Slack if you want to coordinate anything for the next release cycle.

ElDeveloper commented 6 years ago

I have opened this PR in emperor that adds the ability to plot procrustes plots. One key difference from the plots in QIIME 1 is that it allows you to add a description for each matrix you want to compare. This is useful for example when you compare three rarefaction levels and you want to see which matrix represents which rarefaction.

gregcaporaso commented 6 years ago

forum x-ref