Testing classifier issue - Parameter 'confidence' received -1 as an argument, which is incompatible with parameter type: Float % Range(0, 1, inclusive_end=True) | Str % Choices('disable')

[XrandallX]

Hello,

I also received an original error message when trying to test the classifier

I am using a functional genes database for mcrA

######################

Test classifier

###################### qiime feature-classifier classify-sklearn \ --i-classifier classifier.qza \ --i-reads Xrep_set85nonchimeras.qza \ --o-classification taxonomy.qza

This was the error message which as I understand is related to my inputted taxonomy file that has incomplete lineages

Plugin error from feature-classifier:

pop from empty list

I tried to correct by the following addition to the code based on the following thread

https://forum.qiime2.org/t/plugin-error-from-feature-classifier-pop-from-empty-list/1431/11

qiime feature-classifier classify-sklearn --i-reads rep-seqs.qza --i-classifier classifier.qza --o-classification result.qza --p-confidence -1 --p-read-orientation same

This is the new error I received regarding the --p- confidence -1 section below

Plugin error from feature-classifier:

Parameter 'confidence' received -1 as an argument, which is incompatible with parameter type: Float % Range(0, 1, inclusive_end=True) | Str % Choices('disable')

Debug info has been saved to /tmp/qiime2-q2cli-err-dc8df57b.log

Would anyone have any insight please?

Thanks, Kate

[nbokulich]

Please post all user support questions to the QIIME 2 forum. Thank you.