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qiime2
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q2-feature-table
QIIME 2 plugin supporting operations on feature tables.
BSD 3-Clause "New" or "Revised" License
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MAINT: update split to ignore samples that are in the metadata but not the feature table
#315
gregcaporaso
closed
2 weeks ago
0
feature-table split fails if there are samples in the metadata that are not in the feature table
#314
gregcaporaso
closed
2 weeks ago
0
Table Summary should say "Number of Unique Features"
#313
cherman2
opened
1 month ago
1
ENH: Added action `normalize` that can normalize a `FeatureTable[Frequency]` with common methods.
#312
VinzentRisch
opened
1 month ago
0
ENH: Adding new action to normalize FeatureTable[Frequency]
#311
VinzentRisch
opened
1 month ago
0
Test summarize viz
#310
Oddant1
closed
2 months ago
0
Use ConfigParser instead of SafeConfigParser
#309
athos-ribeiro
closed
3 months ago
1
Need to add tests for the summarize viz and for vizualizations in general
#308
Oddant1
opened
3 months ago
3
LANG: remove matplotlib pin for python 3.9 update
#307
lizgehret
closed
3 months ago
2
Feature table summarize refactor
#306
Oddant1
closed
3 months ago
2
Sort correctly in viz by ensuring we have ints
#305
Oddant1
closed
6 months ago
1
BIOM import failed, TypeError: No format: BIOMV210Format
#304
peterjc
closed
6 months ago
3
sample ids not displayed in summarized feature table
#303
gregcaporaso
closed
6 months ago
3
BUG: Summarize Index Patch
#302
Clockwork-Rat
closed
6 months ago
5
IMP: 'subsample' action renamed to 'subsample_ids'
#301
hagenjp
closed
8 months ago
2
BUG: improve error message formatting in `feature-table tabulate-seqs`
#300
hagenjp
closed
8 months ago
0
rename `subsample` action to `subsample-ids`
#299
gregcaporaso
closed
8 months ago
0
BUG: improve error message formatting in `feature-table tabulate-seqs`
#298
lizgehret
closed
8 months ago
0
IMP: adds underscore prefix to helper method inside filter seqs tests
#297
hagenjp
closed
9 months ago
1
IMP: helper method in `filter_seqs` should have an underscore prefix
#296
lizgehret
closed
9 months ago
0
add formatting
#295
Clockwork-Rat
closed
8 months ago
10
Get blast URL correctly
#294
Oddant1
closed
9 months ago
1
minor numeric formatting changes in `summarize` and `summarize-plus`
#293
gregcaporaso
closed
8 months ago
0
IMP: Adds method to raise an error when filtering results in an empty table
#292
hagenjp
closed
9 months ago
4
Summarize 187
#291
Clockwork-Rat
closed
11 months ago
1
Change core to amplicon
#290
Clockwork-Rat
closed
11 months ago
1
CI: Updates to ci-dev workflow
#289
hagenjp
closed
11 months ago
0
Summarize pipeline 282
#288
Clockwork-Rat
closed
9 months ago
2
Summarize 282
#287
Clockwork-Rat
closed
11 months ago
0
Fixes #149
#286
wasade
opened
11 months ago
1
Summarize #276
#285
Clockwork-Rat
closed
11 months ago
6
Tabulate seqs 282
#284
Clockwork-Rat
closed
12 months ago
2
Add additional optional inputs to tabulate_seqs
#283
Clockwork-Rat
closed
12 months ago
1
add new outputs to `summarize`
#282
gregcaporaso
closed
9 months ago
0
IMP: enable merge of FeatureTable[PresenceAbsence]
#281
gregcaporaso
closed
11 months ago
1
DEP: removing matplotlib pin for unifrac update
#280
lizgehret
closed
1 year ago
0
add filter_features_conditionally for FeatureTable[Frequency]
#279
matt-hudgins
closed
1 year ago
0
BUG: Removes 0 as header value when downloading CSVs
#278
cherman2
closed
1 year ago
0
NEW: adds feature-table split method
#277
gregcaporaso
closed
1 year ago
8
add optional inputs to `tabulate-seqs`
#276
gregcaporaso
closed
11 months ago
4
add split-feature-table action
#275
gregcaporaso
closed
1 year ago
0
CI: add additional tests in commands section
#274
Oddant1
closed
1 year ago
0
MAINT: adds typematching functionality for feature-table transpose
#273
cherman2
closed
1 year ago
0
`transpose` should support `FeatureTable[RelativeFrequency]`
#272
gregcaporaso
closed
1 year ago
1
Updated the "Feature Count" and renamed it as "Frequency".
#271
ghubrakesh
closed
1 year ago
3
Update table heading in `feature-table summarize` result
#270
gregcaporaso
closed
1 year ago
1
bug: fix dynamic URL causing usage example failure
#269
lizgehret
closed
1 year ago
0
ex: adds summarize/tabulate-seqs & some misc cleanup
#268
lizgehret
closed
1 year ago
0
ci: force re-render again
#267
lizgehret
closed
1 year ago
0
ci: force re-render for skbio update
#266
lizgehret
closed
1 year ago
0
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