Explicit support for phylogenies

qiime2 / q2-gneiss

QIIME2 plugin for Gneiss

BSD 3-Clause "New" or "Revised" License

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Explicit support for phylogenies #11

Open mortonjt opened 7 years ago

mortonjt commented 7 years ago

Improvement Description There are quite a few problems preventing phylogenies to be used in the qiime2 interface - namely because of the lack of tree tip filtering methods through the q2cli.

This can either be resolved by creating a tip filtering command, or even better, automatically filter tips (via gneiss.util.match_tips) from the tree prior to performing any gneiss command.

Questions Any takers on this? cc @tanaes @wasade

ebolyen commented 7 years ago

@mortonjt, I think this is a related issue https://github.com/qiime2/q2-phylogeny/issues/36