Closed lizgehret closed 4 months ago
Bug Description When running merge on two different metadata files, if one file contains a formatting issue (i.e. CategoricalMetadataColumn contains floats), the name of the offending file is not listed in the error message. See screenshot below:
merge
Steps to reproduce the behavior
sample-metadata.tsv
sample-md1.tsv
sample-md2.tsv
month
categorical
float
qiime metadata merge \ --m-metadata1-file sample-md1.tsv \ --m-metadata2-file sample-md2.tsv \ --o-merged-metadata merged-md.qza \ --verbose
This will produce the error in the screenshot above, giving no indication of whether the offending file is sample-md1.tsv or sample-md2.tsv.
Expected behavior The error message above should begin with something like:
There was an issue with loading the file sample-md1.tsv ...etc
Another one for you to work on when you're ready @hagenjp 🙂
Bug Description When running
merge
on two different metadata files, if one file contains a formatting issue (i.e. CategoricalMetadataColumn contains floats), the name of the offending file is not listed in the error message. See screenshot below:Steps to reproduce the behavior
sample-metadata.tsv
sample-metadata.tsv
file and save it as two different files (e.g.sample-md1.tsv
&sample-md2.tsv
)month
column's comment directive in one of the duplicated files tocategorical
and change the dtype of this column tofloat
.This will produce the error in the screenshot above, giving no indication of whether the offending file is
sample-md1.tsv
orsample-md2.tsv
.Expected behavior The error message above should begin with something like: