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FEAT: Importing multiplexed paired-end data with separated barcode sequence files #300

Open Keegan-Evans opened 1 year ago

Keegan-Evans commented 1 year ago

Addition Description Adds the functionality found in extract_barcodes.py from QIIME to qiime tools [import?].

Current Behavior There currently is not way to import multiplexed data with separate barcodes in QIIME 2, though there was a script to do so for the original QIIME.

Proposed Behavior Adding built in functionality to support: https://forum.qiime2.org/t/importing-multiplexed-paired-end-data-with-separated-barcode-sequence-files/1469 , that is the functionality provided to the original QIIME by extract_barcodes.py.

Questions

  1. Is this worth doing still at this point. Came up again on the forum on 03/21/2023 https://forum.qiime2.org/t/import-multiplexed-data/25848/5

References

  1. recent
  2. Evan's instructions in forum post
  3. Relevantish calls: `extract_barcodes.py docs
lizgehret commented 1 year ago

Also referenced here.