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qiime2 / q2cli

Command line interface for QIIME 2
BSD 3-Clause "New" or "Revised" License
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`--citations` should report plugin citations when called on an action #336

Closed gregcaporaso closed 6 days ago

gregcaporaso commented 3 months ago

Forum x-ref

Current behavior:

$ qiime hello-metagenome --citations
% use `qiime tools citations` on a QIIME 2 result for complete list

@misc{key0,
 author = {Caporaso, J Gregory and Bolyen, Evan},
 howpublished = {https://develop.qiime2.org},
 title = {Developing with QIIME 2},
 year = {2024}
}

$ qiime hello-metagenome duplicate-table --citations
No citations found.

Desired behavior: The action-level --citations report should include all of the citations from the plugin-level --citations report.

Oddant1 commented 1 month ago

@gregcaporaso I opened a PR that should close this and requested your review on it to make sure it's doing what you wanted.