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qiime2 / q2galaxy

Generate Galaxy tool descriptions automatically from QIIME 2 actions.
BSD 3-Clause "New" or "Revised" License
19 stars 18 forks source link

Running on Apple Silicon M1 #53

Closed nikothomas closed 5 months ago

nikothomas commented 6 months ago

Bug Description Using the recommended command line input to start an image docker run -d -p 8080:80 -p 8021:21 -p 8022:22 -v $HOME/q2galaxy_data/:/export/ quay.io/qiime2/q2galaxy results in a warning WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested furthermore it seems to prevent exposure of port 8080 on the localhost.

Steps to reproduce the behavior

  1. Follow the docker steps in the README for Docker setup up to the last terminal command.
  2. While running macOS on a M1 chip go to terminal.
  3. Run docker run -d -p 8080:80 -p 8021:21 -p 8022:22 -v $HOME/q2galaxy_data/:/export/ quay.io/qiime2/q2galaxy
  4. See error WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested

Expected behavior I expected the docker image to be created successfully.

Computation Environment

Fix

  1. Run this command to start the container instead (added --platform linux/amd64) docker run --platform linux/amd64 -d -p 8080:80 -p 8021:21 -p 8022:22 -v $HOME/q2galaxy_data/:/export/ quay.io/qiime2/q2galaxy

References

  1. Where I found the fix
ebolyen commented 5 months ago

Thanks @nikothomas! I've updated the readme with your suggestion: https://github.com/qiime2/q2galaxy/commit/c837f392bb4ec27cea21f49c53afe5dd8f207826