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qingnanl / gsdensity

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Error `assay` must be one of "RNA", not "data" #2

Closed EzequielD-86 closed 10 months ago

EzequielD-86 commented 10 months ago

Hello, thank you for developing the package, looks great. I was trying to give it a shot, but i am getting the following error using the pbmc3k and my own data: Any idea on how to solve this? Is it related to the Seurat update? Error in (function (cond) : error in evaluating the argument 'x' in selecting a method for function 'as.matrix': assay must be one of "RNA", not "data".

R version 4.2.3 (2023-03-15) Platform: aarch64-apple-darwin20 (64-bit) Running under: macOS 14.1.1

qingnanl commented 10 months ago

Hello, thank you for developing the package, looks great. I was trying to give it a shot, but i am getting the following error using the pbmc3k and my own data: Any idea on how to solve this? Is it related to the Seurat update? Error in (function (cond) : error in evaluating the argument 'x' in selecting a method for function 'as.matrix': assay must be one of "RNA", not "data".

R version 4.2.3 (2023-03-15) Platform: aarch64-apple-darwin20 (64-bit) Running under: macOS 14.1.1

Thanks. I think it is happening because of the Seurat V5 version you used (I assume so). The Assay structure seems to be different. I will look into it as well.