Closed cadriaans closed 7 months ago
How to get the landmark.csv with every data in the preprocessing phrase? Looking forward to your reply. Thank you very much.
@sunshinelike Hi, sorry for the late response. I overlooked this issue. An example landmark csv file can be found here: https://github.com/qinliuliuqin/Medical-Detection3d-Toolkit/blob/master/demo/case_17_cbct_patient.csv. You need to generate these files by yourself.
@cadriaans Hi, during training, we will crop, normalize, and resample the image. https://github.com/qinliuliuqin/Medical-Detection3d-Toolkit/blob/7a7d98debe54604e38cfd5fad8cb50fdd8d028be/detection3d/config/lmk_train_config.py#L56. During inference, we take the whole image as input and resample it to the training spacing, and then normalize it. More details please refer to the code.
Hi, i was wondering if preprocessing of the data is included in this model or if you need to preprocess the ct data yourself? Like resampling, reshape, alignment and normalization?