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qinqian / lisa

epigenome analysis to rank transcription factors
http://lisa.cistrome.org
MIT License
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Interpretation for LISA results #3

Closed ziyili20 closed 4 years ago

ziyili20 commented 4 years ago

Hello, I have been using LISA recently and found it very helpful. However, it is not clear to me what this "1st sample", "2nd sample", etc. means. Are they referring to different ChIP-seq data sources? Which sample I should look at? I carefully read the software manual. But it is not explained in that manual either.

qinqian commented 4 years ago

Thanks for your feedback! The 1st sample, 2nd sample, etc. means the ChIP-seq samples for the same transcriptional regulators, we should look at the first sample with the lowest p-value. I will add documentation to explain this detail.

ziyili20 commented 4 years ago

Thank you very much for the helpful explanations!

On Wed, Oct 23, 2019 at 7:36 PM Qian Alvin Qin notifications@github.com wrote:

Thanks for your feedback! The 1st sample, 2nd sample, etc. means the ChIP-seq samples for the same transcriptional regulators, we should look at the first sample with the lowest p-value. I will add documentation to explain this detail.

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