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qiyunzhu
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woltka
Woltka: a versatile meta'omic data classifier
BSD 3-Clause "New" or "Revised" License
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Improved vectorized ordinal mapper
#210
qiyunzhu
closed
7 hours ago
0
Formalized the NumPy + Numba solution for ordinal mapper
#209
qiyunzhu
closed
1 day ago
0
missing column labels when running woltka classify on individual samfile
#208
sherlyn99
closed
2 months ago
2
[Bug] KEGG database is missing reactions in certain modules
#207
jolespin
opened
4 months ago
0
Provide organism agnostic version of pathway_mbrs.txt in the backend via EC numbers
#206
jolespin
opened
4 months ago
0
Improved handling of range coordinates
#205
qiyunzhu
closed
1 week ago
0
Coverage stop coordinate switch to exclusive
#204
wasade
closed
1 week ago
4
Trying to build a phylogenetic tree using output in Qiita
#203
lrt666
opened
6 months ago
0
Change back changelog links
#202
qiyunzhu
closed
7 months ago
0
Replaced links in changelog
#201
qiyunzhu
closed
7 months ago
0
AssertionError: Conflicting values found for "RXN-13667".
#200
deppworld
opened
7 months ago
8
Upgrading to v0.1.6
#199
qiyunzhu
closed
7 months ago
0
Restoring commits
#198
qiyunzhu
closed
7 months ago
0
Updated documentation
#197
qiyunzhu
closed
7 months ago
0
updated coveralls version
#196
qiyunzhu
closed
7 months ago
0
fixing coverage
#195
qiyunzhu
closed
7 months ago
0
fixing github actions
#194
qiyunzhu
closed
7 months ago
0
fixing github actions
#193
qiyunzhu
closed
7 months ago
0
Added exclusion set, and multiple optimizations
#192
qiyunzhu
closed
7 months ago
0
Improved paired-end SAM processing
#191
qiyunzhu
closed
7 months ago
0
Added q2 unit tests
#190
qiyunzhu
closed
7 months ago
0
added streamline docs
#189
qiyunzhu
closed
9 months ago
0
match reads with genes:gloc = genes_pop(code & (1 << 30) - 1) KeyError: 3603
#188
Dexter5577
opened
10 months ago
10
KEGG pathways detected are not represented in pathway coverage results
#187
LLansing
opened
1 year ago
1
AssertionError: Conflicting values found for "1111886".
#186
liushuqing506
opened
1 year ago
3
How to get the phylogenetic tree after following the recommended process to get table.biom
#185
diego00012138
opened
1 year ago
1
ValueError: cannot call `vectorize` on size 0 inputs unless `otypes` is set
#184
samd1993
opened
1 year ago
0
BUG: Ignore hidden files when reading directory
#183
ElDeveloper
closed
1 year ago
0
Added PAF format support
#182
qiyunzhu
closed
1 year ago
0
futher updated change log
#181
qiyunzhu
closed
1 year ago
0
updated change log
#180
qiyunzhu
closed
1 year ago
0
For version 0.1.5
#179
qiyunzhu
closed
1 year ago
0
Upgrading to version 0.1.5
#178
qiyunzhu
closed
1 year ago
0
Backward compatibility
#177
qiyunzhu
closed
1 year ago
0
Improve command-line interface
#176
qiyunzhu
closed
1 year ago
0
tweaked biom rounding
#175
qiyunzhu
closed
1 year ago
0
updated install doc
#174
qiyunzhu
closed
1 year ago
0
added suffix collapse
#173
qiyunzhu
closed
1 year ago
1
fixed coverage issue
#172
qiyunzhu
closed
1 year ago
0
BUG/PERF: avoid dense conversion of biom
#171
wasade
closed
1 year ago
2
[SUGGESTED FEATURE] Dockerized Woltka with numba acceleration
#170
Dane-Z
opened
1 year ago
0
DOC: Add note about MetaCyc classify/collapse
#169
ElDeveloper
closed
1 year ago
3
Data Transformations after Functional classification of genes
#168
jlabus
closed
1 year ago
1
different results between classify directly and collapse after
#167
ProsperP
closed
1 year ago
8
Finding strains and sub-species on WoL
#166
JenniferOnuora
closed
2 years ago
1
Finding sequences uploaded on WoL
#165
JenniferOnuora
closed
1 year ago
6
Fixed sample ID list bug
#164
qiyunzhu
closed
2 years ago
0
woltka classify parameter '--samples' doesn't work properly when supplied with a file (woltka, version 0.1.4, bug report)
#163
ProsperP
closed
2 years ago
2
Support SAM file input through stdin to reduce I/O
#162
ElDeveloper
closed
2 years ago
3
fixed collapse field 1 bug
#161
qiyunzhu
closed
2 years ago
0
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