Add 'diamond' as alternative for 'mmseqs'

qjiangzhao / TEtrimmer

TEtrimmer: a novel tool to automate manual curation of transposable elements

GNU General Public License v3.0

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Add 'diamond' as alternative for 'mmseqs' #17

Closed stefankusch closed 2 months ago

stefankusch commented 5 months ago

MMseqs2 is not suitable for reliable sequence alignment searches. However, in some genomes, blastn may require a lot of resources. Try 'diamond' as a faster alternative.