larsbratholm
commented
4 years ago blas and lapack is not found. Make sure that those packages (or alternatively mkl) is found in your environment / installed.
On Tue, 9 Jun 2020 at 12:14, Gerardo Raggi notifications@github.com wrote:
Hello everyone, I have never had problems installing with pip3 before.
Collecting qml Downloading https://files.pythonhosted.org/packages/7b/f3/c08d18659054cdf5e5dc531ee32ab20e6aa1d3772545837557828a03b1f5/qml-0.4.0.27.tar.gz (41kB) 100% |████████████████████████████████| 51kB 1.2MB/s Building wheels for collected packages: qml Running setup.py bdist_wheel for qml ... error Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-b9e7yqyc/qml/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" bdist_wheel -d /tmp/tmpm3f7m3g3pip-wheel- --python-tag cp36: MKL-discover: MKLROOT was not set running bdist_wheel running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "ffchl_module" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers2.f90' to sources. building extension "farad_kernels" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/farad_kernels-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/farad_kernels-f2pywrappers2.f90' to sources. building extension "fcho_solve" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fcho_solve-f2pywrappers.f' to sources. building extension "fdistance" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fdistance-f2pywrappers.f' to sources. building extension "fkernels" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fkernels-f2pywrappers.f' to sources. building extension "fslatm" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fslatm-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/fslatm-f2pywrappers2.f90' to sources. building extension "frepresentations" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/frepresentations-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/frepresentations-f2pywrappers2.f90' to sources. build_src: building npy-pkg config files running build_py creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/qml copying qml/compound.py -> build/lib.linux-x86_64-3.6/qml copying qml/representations.py -> build/lib.linux-x86_64-3.6/qml copying qml/data.py -> build/lib.linux-x86_64-3.6/qml copying qml/alchemy.py -> build/lib.linux-x86_64-3.6/qml copying qml/init.py -> build/lib.linux-x86_64-3.6/qml copying qml/fchl.py -> build/lib.linux-x86_64-3.6/qml copying qml/kernels.py -> build/lib.linux-x86_64-3.6/qml copying qml/slatm.py -> build/lib.linux-x86_64-3.6/qml copying qml/distance.py -> build/lib.linux-x86_64-3.6/qml copying qml/math.py -> build/lib.linux-x86_64-3.6/qml copying qml/wrappers.py -> build/lib.linux-x86_64-3.6/qml copying qml/arad.py -> build/lib.linux-x86_64-3.6/qml running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'ffchl_module' extension compiling C sources C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating build/temp.linux-x86_64-3.6/build creating build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6 creating build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/build creating build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6 compile options: '-Ibuild/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6 -I/home/graggi/.local/lib/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c' extra options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp' x86_64-linux-gnu-gcc: build/src.linux-x86_64-3.6/ffchl_modulemodule.c x86_64-linux-gnu-gcc: build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c compiling Fortran 90 module sources creating build/temp.linux-x86_64-3.6/qml Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops compile options: '-Ibuild/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6 -I/home/graggi/.local/lib/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c' extra options: '-Jbuild/temp.linux-x86_64-3.6/qml -Ibuild/temp.linux-x86_64-3.6/qml' extra f90 options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp' gfortran:f90: qml/ffchl_module.f90 qml/ffchl_module.f90:275:36:
& t_width, d_width, cut_distance, order, pd, ang_norm2, &
1Warning: Unused dummy argument ‘cut_distance’ at (1) [-Wunused-dummy-argument] compiling Fortran sources Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops compile options: '-Ibuild/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6 -I/home/graggi/.local/lib/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c' extra options: '-Jbuild/temp.linux-x86_64-3.6/qml -Ibuild/temp.linux-x86_64-3.6/qml' extra f90 options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp' gfortran:f90: qml/ffchl_scalar_kernels.f90 extra f90 options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp' gfortran:f90: build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers2.f90 extra f77 options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp' gfortran:f77: build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers.f /usr/bin/gfortran -Wall -g -Wall -g -shared build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_modulemodule.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.o build/temp.linux-x86_64-3.6/qml/ffchl_module.o build/temp.linux-x86_64-3.6/qml/ffchl_scalar_kernels.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers2.o -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7 -lgfortran -o build/lib.linux-x86_64-3.6/qml/ ffchl_module.cpython-36m-x86_64-linux-gnu.so -lgomp -lblas -llapack /usr/bin/ld: cannot find -lblas /usr/bin/ld: cannot find -llapack collect2: error: ld returned 1 exit status error: Command "/usr/bin/gfortran -Wall -g -Wall -g -shared build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_modulemodule.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.o build/temp.linux-x86_64-3.6/qml/ffchl_module.o build/temp.linux-x86_64-3.6/qml/ffchl_scalar_kernels.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers2.o -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7 -lgfortran -o build/lib.linux-x86_64-3.6/qml/ ffchl_module.cpython-36m-x86_64-linux-gnu.so -lgomp -lblas -llapack" failed with exit status 1
Failed building wheel for qml Running setup.py clean for qml Failed to build qml Installing collected packages: qml Running setup.py install for qml ... error Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-b9e7yqyc/qml/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-0kdli_b1-record/install-record.txt --single-version-externally-managed --compile --user --prefix=: MKL-discover: MKLROOT was not set running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "ffchl_module" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers2.f90' to sources. building extension "farad_kernels" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/farad_kernels-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/farad_kernels-f2pywrappers2.f90' to sources. building extension "fcho_solve" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fcho_solve-f2pywrappers.f' to sources. building extension "fdistance" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fdistance-f2pywrappers.f' to sources. building extension "fkernels" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fkernels-f2pywrappers.f' to sources. building extension "fslatm" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fslatm-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/fslatm-f2pywrappers2.f90' to sources. building extension "frepresentations" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/frepresentations-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/frepresentations-f2pywrappers2.f90' to sources. build_src: building npy-pkg config files running build_py creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/qml copying qml/compound.py -> build/lib.linux-x86_64-3.6/qml copying qml/representations.py -> build/lib.linux-x86_64-3.6/qml copying qml/data.py -> build/lib.linux-x86_64-3.6/qml copying qml/alchemy.py -> build/lib.linux-x86_64-3.6/qml copying qml/init.py -> build/lib.linux-x86_64-3.6/qml copying qml/fchl.py -> build/lib.linux-x86_64-3.6/qml copying qml/kernels.py -> build/lib.linux-x86_64-3.6/qml copying qml/slatm.py -> build/lib.linux-x86_64-3.6/qml copying qml/distance.py -> build/lib.linux-x86_64-3.6/qml copying qml/math.py -> build/lib.linux-x86_64-3.6/qml copying qml/wrappers.py -> build/lib.linux-x86_64-3.6/qml copying qml/arad.py -> build/lib.linux-x86_64-3.6/qml running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'ffchl_module' extension compiling C sources C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating build/temp.linux-x86_64-3.6/build
creating build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/build
creating build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6
compile options: '-Ibuild/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6 -I/home/graggi/.local/lib/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c'
extra options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp'
x86_64-linux-gnu-gcc: build/src.linux-x86_64-3.6/ffchl_modulemodule.c
x86_64-linux-gnu-gcc: build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c
compiling Fortran 90 module sources
creating build/temp.linux-x86_64-3.6/qml
Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
compile options: '-Ibuild/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6 -I/home/graggi/.local/lib/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c'
extra options: '-Jbuild/temp.linux-x86_64-3.6/qml -Ibuild/temp.linux-x86_64-3.6/qml'
extra f90 options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp'
gfortran:f90: qml/ffchl_module.f90
qml/ffchl_module.f90:275:36:
& t_width, d_width, cut_distance, order, pd, ang_norm2, & 1Warning: Unused dummy argument ‘cut_distance’ at (1) [-Wunused-dummy-argument]
compiling Fortran sources
Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
compile options: '-Ibuild/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6 -I/home/graggi/.local/lib/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c'
extra options: '-Jbuild/temp.linux-x86_64-3.6/qml -Ibuild/temp.linux-x86_64-3.6/qml'
extra f90 options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp'
gfortran:f90: qml/ffchl_scalar_kernels.f90
extra f90 options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp'
gfortran:f90: build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers2.f90
extra f77 options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp'
gfortran:f77: build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers.f
/usr/bin/gfortran -Wall -g -Wall -g -shared build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_modulemodule.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.o build/temp.linux-x86_64-3.6/qml/ffchl_module.o build/temp.linux-x86_64-3.6/qml/ffchl_scalar_kernels.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers2.o -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7 -lgfortran -o build/lib.linux-x86_64-3.6/qml/ffchl_module.cpython-36m-x86_64-linux-gnu.so -lgomp -lblas -llapack
/usr/bin/ld: cannot find -lblas
/usr/bin/ld: cannot find -llapack
collect2: error: ld returned 1 exit status
error: Command "/usr/bin/gfortran -Wall -g -Wall -g -shared build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_modulemodule.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.o build/temp.linux-x86_64-3.6/qml/ffchl_module.o build/temp.linux-x86_64-3.6/qml/ffchl_scalar_kernels.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers2.o -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7 -lgfortran -o build/lib.linux-x86_64-3.6/qml/ffchl_module.cpython-36m-x86_64-linux-gnu.so -lgomp -lblas -llapack" failed with exit status 1
Command "/usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-b9e7yqyc/qml/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-0kdli_b1-record/install-record.txt --single-version-externally-managed --compile --user --prefix=" failed with error code 1 in /tmp/pip-build-b9e7yqyc/qml/
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/qmlcode/qml/issues/128, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAVWNHZEXVST4BULOQJT7YTRVYKQ5ANCNFSM4NZJVG7Q .
andersx
Hello everyone, I have never had problems installing with pip3 before. I have Ubuntu 18.04.4 LTS. Thanks
Collecting qml Downloading https://files.pythonhosted.org/packages/7b/f3/c08d18659054cdf5e5dc531ee32ab20e6aa1d3772545837557828a03b1f5/qml-0.4.0.27.tar.gz (41kB) 100% |████████████████████████████████| 51kB 1.2MB/s Building wheels for collected packages: qml Running setup.py bdist_wheel for qml ... error Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-b9e7yqyc/qml/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" bdist_wheel -d /tmp/tmpm3f7m3g3pip-wheel- --python-tag cp36: MKL-discover: MKLROOT was not set running bdist_wheel running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "ffchl_module" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers2.f90' to sources. building extension "farad_kernels" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/farad_kernels-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/farad_kernels-f2pywrappers2.f90' to sources. building extension "fcho_solve" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fcho_solve-f2pywrappers.f' to sources. building extension "fdistance" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fdistance-f2pywrappers.f' to sources. building extension "fkernels" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fkernels-f2pywrappers.f' to sources. building extension "fslatm" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fslatm-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/fslatm-f2pywrappers2.f90' to sources. building extension "frepresentations" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/frepresentations-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/frepresentations-f2pywrappers2.f90' to sources. build_src: building npy-pkg config files running build_py creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/qml copying qml/compound.py -> build/lib.linux-x86_64-3.6/qml copying qml/representations.py -> build/lib.linux-x86_64-3.6/qml copying qml/data.py -> build/lib.linux-x86_64-3.6/qml copying qml/alchemy.py -> build/lib.linux-x86_64-3.6/qml copying qml/init.py -> build/lib.linux-x86_64-3.6/qml copying qml/fchl.py -> build/lib.linux-x86_64-3.6/qml copying qml/kernels.py -> build/lib.linux-x86_64-3.6/qml copying qml/slatm.py -> build/lib.linux-x86_64-3.6/qml copying qml/distance.py -> build/lib.linux-x86_64-3.6/qml copying qml/math.py -> build/lib.linux-x86_64-3.6/qml copying qml/wrappers.py -> build/lib.linux-x86_64-3.6/qml copying qml/arad.py -> build/lib.linux-x86_64-3.6/qml running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'ffchl_module' extension compiling C sources C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating build/temp.linux-x86_64-3.6/build creating build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6 creating build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/build creating build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6 compile options: '-Ibuild/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6 -I/home/graggi/.local/lib/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c' extra options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp' x86_64-linux-gnu-gcc: build/src.linux-x86_64-3.6/ffchl_modulemodule.c x86_64-linux-gnu-gcc: build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c compiling Fortran 90 module sources creating build/temp.linux-x86_64-3.6/qml Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops compile options: '-Ibuild/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6 -I/home/graggi/.local/lib/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c' extra options: '-Jbuild/temp.linux-x86_64-3.6/qml -Ibuild/temp.linux-x86_64-3.6/qml' extra f90 options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp' gfortran:f90: qml/ffchl_module.f90 qml/ffchl_module.f90:275:36:
Warning: Unused dummy argument ‘cut_distance’ at (1) [-Wunused-dummy-argument] compiling Fortran sources Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops compile options: '-Ibuild/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6 -I/home/graggi/.local/lib/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c' extra options: '-Jbuild/temp.linux-x86_64-3.6/qml -Ibuild/temp.linux-x86_64-3.6/qml' extra f90 options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp' gfortran:f90: qml/ffchl_scalar_kernels.f90 extra f90 options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp' gfortran:f90: build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers2.f90 extra f77 options: '-O3 -fopenmp -m64 -march=native -fPIC -Wno-maybe-uninitialized -Wno-unused-function -Wno-cpp' gfortran:f77: build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers.f /usr/bin/gfortran -Wall -g -Wall -g -shared build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_modulemodule.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.o build/temp.linux-x86_64-3.6/qml/ffchl_module.o build/temp.linux-x86_64-3.6/qml/ffchl_scalar_kernels.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers2.o -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7 -lgfortran -o build/lib.linux-x86_64-3.6/qml/ffchl_module.cpython-36m-x86_64-linux-gnu.so -lgomp -lblas -llapack /usr/bin/ld: cannot find -lblas /usr/bin/ld: cannot find -llapack collect2: error: ld returned 1 exit status error: Command "/usr/bin/gfortran -Wall -g -Wall -g -shared build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_modulemodule.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.o build/temp.linux-x86_64-3.6/qml/ffchl_module.o build/temp.linux-x86_64-3.6/qml/ffchl_scalar_kernels.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers2.o -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7 -lgfortran -o build/lib.linux-x86_64-3.6/qml/ffchl_module.cpython-36m-x86_64-linux-gnu.so -lgomp -lblas -llapack" failed with exit status 1
Failed building wheel for qml Running setup.py clean for qml Failed to build qml Installing collected packages: qml Running setup.py install for qml ... error Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-b9e7yqyc/qml/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-0kdli_b1-record/install-record.txt --single-version-externally-managed --compile --user --prefix=: MKL-discover: MKLROOT was not set running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "ffchl_module" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/ffchl_module-f2pywrappers2.f90' to sources. building extension "farad_kernels" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/farad_kernels-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/farad_kernels-f2pywrappers2.f90' to sources. building extension "fcho_solve" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fcho_solve-f2pywrappers.f' to sources. building extension "fdistance" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fdistance-f2pywrappers.f' to sources. building extension "fkernels" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fkernels-f2pywrappers.f' to sources. building extension "fslatm" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/fslatm-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/fslatm-f2pywrappers2.f90' to sources. building extension "frepresentations" sources f2py options: ['--quiet'] adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6' to include_dirs. adding 'build/src.linux-x86_64-3.6/frepresentations-f2pywrappers.f' to sources. adding 'build/src.linux-x86_64-3.6/frepresentations-f2pywrappers2.f90' to sources. build_src: building npy-pkg config files running build_py creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/qml copying qml/compound.py -> build/lib.linux-x86_64-3.6/qml copying qml/representations.py -> build/lib.linux-x86_64-3.6/qml copying qml/data.py -> build/lib.linux-x86_64-3.6/qml copying qml/alchemy.py -> build/lib.linux-x86_64-3.6/qml copying qml/init.py -> build/lib.linux-x86_64-3.6/qml copying qml/fchl.py -> build/lib.linux-x86_64-3.6/qml copying qml/kernels.py -> build/lib.linux-x86_64-3.6/qml copying qml/slatm.py -> build/lib.linux-x86_64-3.6/qml copying qml/distance.py -> build/lib.linux-x86_64-3.6/qml copying qml/math.py -> build/lib.linux-x86_64-3.6/qml copying qml/wrappers.py -> build/lib.linux-x86_64-3.6/qml copying qml/arad.py -> build/lib.linux-x86_64-3.6/qml running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'ffchl_module' extension compiling C sources C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
Command "/usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-b9e7yqyc/qml/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-0kdli_b1-record/install-record.txt --single-version-externally-managed --compile --user --prefix=" failed with error code 1 in /tmp/pip-build-b9e7yqyc/qml/