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qqwang-berkeley / JUM

A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
MIT License
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NA qvalues #25

Open snallu opened 4 years ago

snallu commented 4 years ago

Hello,

I ran JUM 2.0, the final output files generated had very few differentially spliced genes (qvalue 0.05). And also the qvalue was listed as NA for a lot of genes, though the pvalue was not NA, I'm not sure if the qvalues were calculated correctly, I'm attaching one of the output files. Please let me know if you need any other files for troubleshooting.

Thanks! AS_differential_JUM_output_cassette_exon_events_pvalue_1_final_simplified.txt