I ran JUM 2.0, the final output files generated had very few differentially spliced genes (qvalue 0.05). And also the qvalue was listed as NA for a lot of genes, though the pvalue was not NA, I'm not sure if the qvalues were calculated correctly, I'm attaching one of the output files. Please let me know if you need any other files for troubleshooting.
Hello,
I ran JUM 2.0, the final output files generated had very few differentially spliced genes (qvalue 0.05). And also the qvalue was listed as NA for a lot of genes, though the pvalue was not NA, I'm not sure if the qvalues were calculated correctly, I'm attaching one of the output files. Please let me know if you need any other files for troubleshooting.
Thanks! AS_differential_JUM_output_cassette_exon_events_pvalue_1_final_simplified.txt