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qsyao / cuda_spatial_deform

A fast tool to do image augmentation on GPU(especially elastic_deform), can be helpful to research on Medical Image.
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Error in cuda 9-2 #2

Closed John1231983 closed 4 years ago

John1231983 commented 5 years ago

I am building the code in cuda 9.2 but I got the error

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9220): error: argument of type "const void *" is incompatible with parameter of type "const float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9231): error: argument of type "const void *" is incompatible with parameter of type "const float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9244): error: argument of type "const void *" is incompatible with parameter of type "const double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9255): error: argument of type "const void *" is incompatible with parameter of type "const double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9268): error: argument of type "const void *" is incompatible with parameter of type "const float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9279): error: argument of type "const void *" is incompatible with parameter of type "const float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9292): error: argument of type "const void *" is incompatible with parameter of type "const double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9220): error: argument of type "const void *" is incompatible with parameter of type "const float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9303): error: argument of type "const void *" is incompatible with parameter of type "const double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9231): error: argument of type "const void *" is incompatible with parameter of type "const float *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9316): error: argument of type "const void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9244): error: argument of type "const void *" is incompatible with parameter of type "const double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9327): error: argument of type "const void *" is incompatible with parameter of type "const int *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9255): error: argument of type "const void *" is incompatible with parameter of type "const double *"

/usr/lib/gcc/x86_64-linux-gnu/5/include/avx512fintrin.h(9340): error: argument of type "const void *" is incompatible with parameter of type "const long long *"

How to fix it? Thanks

John1231983 commented 5 years ago

Ok. I checked it and it worked in cuda 8.0. I will downgrade it.

For elastic deform, if the raw image is deformed. How to apply the deformation to the label? Thanks

qsyao commented 4 years ago

You can do "output = cuda_handle.augment(array_image, order=1)" after u define your flow, and order =1 for linear interpolation when processing images, order=0 for nearest interpolation when processing labels. They will be deformed by the same flow u define above.