quadbio / Pando

Multiome GRN inference.
https://quadbio.github.io/Pando/
MIT License
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phastCons for Mus musculus #27

Closed sylestiel closed 1 year ago

sylestiel commented 1 year ago

When working with mm10 genome what files do we download in lieu of the following:

data('phastConsElements20Mammals.UCSC.hg38')

joschif commented 1 year ago

You should be able to get the respective regions from the UCSC website https://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=cons30way

Ping-lin14 commented 1 year ago

使用 mm10 基因組時,我們下載哪些文件來代替以下文件:

數據('phastConsElements20Mammals.UCSC.hg38')

Hi, Have you successfully created the mm10 replacement file? Can you share it?

sylestiel commented 1 year ago

@Ping-lin14 @joschif @

Unfortunately, I have could not figured out how to download the appropriate mouse dataset.