Hi, thank you for this useful package! I
I ran Pando with my data and I got a SeuratPlus object. Now I would like to explore the regions with high chromatin accessibility (regions with many peaks) and that the TFs that bind to this region have a positive relation with their target gene (that potentially could represent an enhancer region). Do you know how can I extract this information from the SeuratPlust object? I think that maybe could be the information in PandoObject@grn@regions@motifs@data or PandoObject@grn@regions@motifs@positions but I'm not sure.
Hi, thank you for this useful package! I I ran Pando with my data and I got a SeuratPlus object. Now I would like to explore the regions with high chromatin accessibility (regions with many peaks) and that the TFs that bind to this region have a positive relation with their target gene (that potentially could represent an enhancer region). Do you know how can I extract this information from the SeuratPlust object? I think that maybe could be the information in
PandoObject@grn@regions@motifs@dataorPandoObject@grn@regions@motifs@positionsbut I'm not sure.