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quadbio / VoxHunt

VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
https://quadbio.github.io/VoxHunt/
MIT License
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Error load_mousebrain_data #13

Open AAA-3 opened 5 months ago

AAA-3 commented 5 months ago

Same issue as #8

I downloaded the file from the linarson's website using HybISS spatial expression data:

load_mousebrain_data("/home/ali/Dokumente/voxhunt_mousedata/")

Error in x$exists(name) : HDF5-API Errors: error #000: ../../../src/H5L.c in H5Lexists(): line 815: unable to get link info class: HDF5 major: Links minor: Can't get value error #001: ../../../src/H5L.c in H5L__exists(): line 3095: path doesn't exist class: HDF5 major: Links minor: Object already exists error #002: ../../../src/H5Gtraverse.c in H5G_traverse(): line 851: internal path traversal failed class: HDF5 major: Symbol table minor: Object not found error #003: ../../../src/H5Gtraverse.c in H5G__traverse_real(): line 741: component not found class: HDF5 major: Symbol table minor: Object not found
4.
x$exists(name)
3.
`[[.H5File`(all_loom, "col_attrs/TSNE")
2.
all_loom[["col_attrs/TSNE"]]
1.
load_mousebrain_data("/home/ali/Dokumente/voxhunt_mousedata/")