Installation problem (Lazy loading failed for 'package' voxhunt)

[fkrbry]

Hi,

Having bit of a problem installing voxhunt (Rstudio v1.2.5033, OsX). Here is the error below. Solution offered in issue #1 (reinstalling 'hhoeflin/hdf5r') did not help in this case. Would appreciate any help!

devtools::install_github('immunogenomics/presto') Skipping install of 'presto' from a github remote, the SHA1 (7f63f960) has not changed since last install. Use force = TRUE to force installation devtools::install_github('quadbiolab/voxhunt') Downloading GitHub repo quadbiolab/voxhunt@master ✓ checking for file ‘/private/var/folders/5n/wwyb571x5mz5ktkl0qyt4lwc0000gn/T/Rtmp8zNpfK/remotesd5684a9cd2d6/quadbiolab-VoxHunt-be3ee72/DESCRIPTION’ ... ─ preparing ‘voxhunt’: ✓ checking DESCRIPTION meta-information ... ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ looking to see if a ‘data/datalist’ file should be added ─ building ‘voxhunt_0.6.0.tar.gz’ (5.1s)

• installing source package ‘voxhunt’ ... using staged installation R ** data * moving datasets to lazyload DB byte-compile and prepare package for lazy loading Error: (converted from warning) package ‘tibble’ was built under R version 3.6.2 Execution halted ERROR: lazy loading failed for package ‘voxhunt’
• removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/voxhunt’ Error: Failed to install 'voxhunt' from GitHub: (converted from warning) installation of package ‘/var/folders/5n/wwyb571x5mz5ktkl0qyt4lwc0000gn/T//Rtmp8zNpfK/filed5687dd605de/voxhunt_0.6.0.tar.gz’ had non-zero exit status

[joschif]

Hi fkrbry,

thanks for reporting the problem. It seems like your issue is related to your tibble installation and/or you version of R. If your R version is not the most recent, maybe try updating it and reinstalling tibble. If that does not help, please provide me with the output of sessionInfo().

Best, Jonas

[fkrbry]

Reinstalling tibble didn't help unfortunately, still getting the same error. Here is the session info:

sessionInfo() R version 3.6.1 (2019-07-05) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Mojave 10.14.6

Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] rstudioapi_0.11 magrittr_1.5 usethis_1.6.0 devtools_2.3.0 pkgload_1.0.2 R6_2.4.1
[7] rlang_0.4.5 fansi_0.4.1 tools_3.6.1 pkgbuild_1.0.6 sessioninfo_1.1.1 cli_2.0.2
[13] withr_2.1.2 ellipsis_0.3.0 remotes_2.1.1 assertthat_0.2.1 digest_0.6.25 rprojroot_1.3-2
[19] crayon_1.3.4 processx_3.4.2 callr_3.4.3 fs_1.4.1 ps_1.3.2 curl_4.3
[25] testthat_2.3.2 memoise_1.1.0 glue_1.4.0 compiler_3.6.1 desc_1.2.0 backports_1.1.6
[31] prettyunits_1.1.1

[joschif]

Thanks for the info. It seems like there is a mismatch between your R version (3.6.1) and the one tibble was build under (3.6.2). Installing a more recent version of R such as 3.6.3 might resolve the issue.

[fkrbry]

that did it, thank you!