Open Kenneth-new-user opened 1 year ago
Do you have the same issue if you use the default spectrum type "corr_ztransform" instead of the current setting "corr_kernel"?
hi do you have solved this problem? it did not pop up initially, but I encountered it just now
Do you have the same issue if you use the default spectrum type "corr_ztransform" instead of the current setting "corr_kernel"?
I have the same issue using "corr_ztransform". I am using Seurat V5 and I remember that I have run this step without error when using Seurat V4. Is it the possible reason?
Do you have the same issue if you use the default spectrum type "corr_ztransform" instead of the current setting "corr_kernel"?
I have the same issue using "corr_ztransform". I am using Seurat V5 and I remember that I have run this step without error when using Seurat V4. Is it the possible reason?
I've check the cell.embedding of the css reduction. Turns out that there are NAs in the cell.embedding. I could continue by converting all the NAs into 0, but is there any other solutions that can solve this issue in a more elegant way? Thank you for your help!
The CSS part runs fine to completion and the CSS matrix is populated
Then when I try to plot the results in a UMAP by running the UMAP function,
The following error pops up.