quansun98
commented
1 year ago Hello,
All the imputations were performed on either Michigan Imputation Server or TOPMed Imputation Server. I believe they implemented minimac4 version 1.0.0, released 2.14.2018.
Best, Quan
On Jan 19, 2023, at 5:53 AM, ttbek @.**@.>> wrote:
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Which exact version of Minimac 4 was used for training and testing in the associated paper?
That is: https://doi.org/10.1016/j.ajhg.2022.09.009 Sun, Q., Yang, Y., Rosen, J. D., Jiang, M. Z., Chen, J., Liu, W., Wen, J., Raffield, L. M., Pace, R. G., Zhou, Y. H., Wright, F. A., Blackman, S. M., Bamshad, M. J., Gibson, R. L., Cutting, G. R., Knowles, M. R., Schrider, D. R., Fuchsberger, C., & Li, Y. (2022). MagicalRsq: Machine-learning-based genotype imputation quality calibration. American journal of human genetics, 109(11), 1986–1997. https://doi.org/10.1016/j.ajhg.2022.09.009
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ttbek
Which exact version of Minimac 4 was used for training and testing in the associated paper?
That is: https://doi.org/10.1016/j.ajhg.2022.09.009 Sun, Q., Yang, Y., Rosen, J. D., Jiang, M. Z., Chen, J., Liu, W., Wen, J., Raffield, L. M., Pace, R. G., Zhou, Y. H., Wright, F. A., Blackman, S. M., Bamshad, M. J., Gibson, R. L., Cutting, G. R., Knowles, M. R., Schrider, D. R., Fuchsberger, C., & Li, Y. (2022). MagicalRsq: Machine-learning-based genotype imputation quality calibration. American journal of human genetics, 109(11), 1986–1997. https://doi.org/10.1016/j.ajhg.2022.09.009