Open popenc opened 3 years ago
Added update for half-live issues where the incorrect product was being used as a given product's parent (was using previous one whether parent or adjacent node). Further testing needed to determine if issues are resolved or if more persists.
New updates on gdit/ceam dev reading for testing. With test SMILES, CCOC(=O)CCl, it looks like the EPI QSAR endpoint returns a half-life for the "Halogenated Aliphatics: Nucleophilic Substitution (no adjacent X)" route although the document, "qsar_example_1" shows that it should not.
1 -> 1.2
URL: http://localhost/episuite/rest/episuite/hydrolysis/alkylhalide
POST: {"structure": "CCOC(=O)CCl"}
Response:
{
"data": [
{
"chemical": "CCOC(=O)CCl",
"prop": "Kb Half-Life at pH 7",
"calc": "epi",
"method": "AlkylHalide",
"data": "9.063",
"units": "days"
}
]
}
Expected: No value
TODO: Update on EPA Staging (EPI Suite and CTS).
Review the chemical information workflow for identifying how to filter the SMILES when making a request to EPI Suite (even for half-lives). SMILES with charged nitro groups (am I saying that right?) aren’t getting data from EPI because it doesn’t under those chemicals.
ceam dev is now updated with EPI SMILES filtering before requesting half lives.
EPI Suite has been updated on ceam dev with Kurt's changes. Ready for testing again.
Half lives are fixed on ceam dev and returning data again. The routing to EPI Suite had changed since migrating AWS accounts.
Updated ceam dev windows server with Kurt's EPI Suite wrapper updates, which add atom_number to the half life response. Next steps are to update the CTS backend to account for OP Ester workflow case C.
Updates for case C now added to ceam dev for testing.
Updates from Complete_Flowchart_7282023.pptx are on ceam dev.
Get rate constants / half-lives from EPI Suite!
Kurt has added this feature to the EPI wrapper, now the frontend needs updates.
See document: AddingQSARtoCTS_031621.docx