quantumjot / btrack

Bayesian multi-object tracking
https://btrack.readthedocs.io
MIT License
311 stars 50 forks source link

Refactor I/O #197

Closed quantumjot closed 1 year ago

quantumjot commented 1 year ago

Refactor btrack I/O

deprecated-napari-hub-preview-bot[bot] commented 1 year ago

Preview page for your plugin is ready here: https://preview.napari-hub.org/quantumjot/BayesianTracker/197 Updated: 2023-02-02T10:12:59.780531

codecov-commenter commented 1 year ago

Codecov Report

Base: 86.93% // Head: 87.53% // Increases project coverage by +0.59% :tada:

Coverage data is based on head (6611e0d) compared to base (86ec60b). Patch coverage: 84.31% of modified lines in pull request are covered.

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #197 +/- ## ========================================== + Coverage 86.93% 87.53% +0.59% ========================================== Files 14 19 +5 Lines 1523 1548 +25 ========================================== + Hits 1324 1355 +31 + Misses 199 193 -6 ``` | [Impacted Files](https://codecov.io/gh/quantumjot/BayesianTracker/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Alan+R+Lowe) | Coverage Δ | | |---|---|---| | [btrack/dataio.py](https://codecov.io/gh/quantumjot/BayesianTracker/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Alan+R+Lowe#diff-YnRyYWNrL2RhdGFpby5weQ==) | `0.00% <0.00%> (-80.68%)` | :arrow_down: | | [btrack/io/hdf.py](https://codecov.io/gh/quantumjot/BayesianTracker/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Alan+R+Lowe#diff-YnRyYWNrL2lvL2hkZi5weQ==) | `82.75% <82.75%> (ø)` | | | [btrack/io/exporters.py](https://codecov.io/gh/quantumjot/BayesianTracker/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Alan+R+Lowe#diff-YnRyYWNrL2lvL2V4cG9ydGVycy5weQ==) | `83.33% <83.33%> (ø)` | | | [btrack/io/utils.py](https://codecov.io/gh/quantumjot/BayesianTracker/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Alan+R+Lowe#diff-YnRyYWNrL2lvL3V0aWxzLnB5) | `90.69% <90.69%> (ø)` | | | [btrack/core.py](https://codecov.io/gh/quantumjot/BayesianTracker/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Alan+R+Lowe#diff-YnRyYWNrL2NvcmUucHk=) | `88.44% <100.00%> (ø)` | | | [btrack/datasets.py](https://codecov.io/gh/quantumjot/BayesianTracker/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Alan+R+Lowe#diff-YnRyYWNrL2RhdGFzZXRzLnB5) | `58.82% <100.00%> (ø)` | | | [btrack/io/\_\_init\_\_.py](https://codecov.io/gh/quantumjot/BayesianTracker/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Alan+R+Lowe#diff-YnRyYWNrL2lvL19faW5pdF9fLnB5) | `100.00% <100.00%> (ø)` | | | [btrack/io/\_localization.py](https://codecov.io/gh/quantumjot/BayesianTracker/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Alan+R+Lowe#diff-YnRyYWNrL2lvL19sb2NhbGl6YXRpb24ucHk=) | `91.86% <100.00%> (ø)` | | | [btrack/io/importers.py](https://codecov.io/gh/quantumjot/BayesianTracker/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Alan+R+Lowe#diff-YnRyYWNrL2lvL2ltcG9ydGVycy5weQ==) | `100.00% <100.00%> (ø)` | | | [btrack/napari/reader.py](https://codecov.io/gh/quantumjot/BayesianTracker/pull/197?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Alan+R+Lowe#diff-YnRyYWNrL25hcGFyaS9yZWFkZXIucHk=) | `79.31% <100.00%> (ø)` | | | ... and [4 more](https://codecov.io/gh/quantumjot/BayesianTracker/pull/197?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Alan+R+Lowe) | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Alan+R+Lowe). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Alan+R+Lowe)

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