Add method to retrieve full tracking graph

quantumjot commented 1 year ago

This adds a method to enable retrieval of the full track graph from btrack.

Internally, this means that a flag is set to store the edges and hyperedges in the TrackManager class in the C++ lib.
I've added a new configuration option TrackerConfig.store_candidate_graph which lets the TrackManager know to reserve space and store the candidate graph edges.
In Python, These can be returned with the candidate_graph_edges() method:

with btrack.BayesianTracker() as tracker:
    tracker.configuration.store_candidate_graph = True
    ...
    candidate_graph = tracker.candidate_graph_edges()

I've also added a couple of tests (test_tracker_candidate_graph) to make sure that this function returns edges when the config flag is set.
This also tests the CI based compilation introduced in #231
I also applied some automated formatting (Google style) to the C++ code and applied a few small changes to supress warnings about definitions in the headers.

Closes #227

deprecated-napari-hub-preview-bot[bot] commented 1 year ago

Preview page for your plugin is ready here: https://preview.napari-hub.org/quantumjot/btrack/228 Updated: 2023-03-21T17:20:53.135823

quantumjot commented 1 year ago

Tests will fail until #231 is merged.

paddyroddy commented 1 year ago

Tests will fail until #231 is merged.

It's merged now

quantumjot commented 1 year ago

One thought is that we should add a formatting pre-commit hook for the C++, e.g. https://github.com/pre-commit/mirrors-clang-format or https://github.com/pocc/pre-commit-hooks

I agree, this would be a good idea.

quantumjot commented 1 year ago

Thanks @paddyroddy. Suggestions have been implemented now.

quantumjot / btrack

Add method to retrieve full tracking graph #228