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quantumjot / sequitr

Microscopy image processing with TensorFlow
http://lowe.cs.ucl.ac.uk
MIT License
5 stars 1 forks source link

More documentation #1

Open joaomamede opened 3 years ago

joaomamede commented 3 years ago

Hi,

Do you have more documentation of a notebook with examples to start with? This seems exactly what we need for our projects. Thanks so much!

quantumjot commented 3 years ago

Hi @joaomamede - this repo is not really being maintained now. We've replaced much of this with other projects. Is there something in particular that you were looking to do?

joaomamede commented 3 years ago

The nucleus/cell detection is working well with other tools. The combination with baesian tracker and napari would make it much easier to use than writing the whole steps.

My whole setup it there's no ready to use package would be Nucleus/cell segmentation, then centroids, then trackpy for cell tracks, then napari.

Thanks for your reply

quantumjot commented 3 years ago

@joaomamede - thanks for this. I've made an update for btrack which will enable this. We're just testing it at the moment, but I'll let you know when it's done...

quantumjot commented 3 years ago

I've added a notebook to show how to use the functionality for v0.4.1: https://github.com/quantumjot/BayesianTracker/blob/master/examples/segmentation_to_btrack_to_napari.ipynb