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Quarto open-source scientific and technical publishing system
https://quarto.org
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Error rendering Quarto document to PDF: `LaTeX Error: Missing \begin{document}`. #178

Closed lorenzoFabbri closed 1 year ago

lorenzoFabbri commented 1 year ago

On my Linux machine (OS based on KDE Plasma 5.27.4) I used to render the document in object without any error. Since yesterday, I am facing many issues. I removed the content of the document and left only the yml:

---
title: "Paper 3"
metadata-files:
  - ../../../all_phd/authors.yml
format:
  pdf:
    pdf-engine: pdflatex
    number-sections: true
    toc: false
    margin-left: 15mm
    margin-right: 15mm
    margin-bottom: 20mm
    margin-top: 15mm
    include-in-header:
      text: |
        - \usepackage{rotating}
        - \usepackage{float}
        - \usepackage{typearea}
link-citations: true
linkcolor: blue
execute:
  echo: false
  warning: false
  error: false
  message: false
editor_options: 
  chunk_output_type: console
---

I am getting the following error message:

compilation failed- error
LaTeX Error: Missing \begin{document}.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              

l.82 -
       \usepackage{rotating} 

see tmp.log for more information.
ERROR: Error
    at renderFiles (file:///home/lorenzo/applications/quarto-cli/src/command/render/render-files.ts:540:23)
    at eventLoopTick (ext:core/01_core.js:181:11)
    at async render (file:///home/lorenzo/applications/quarto-cli/src/command/render/render-shared.ts:98:18)
    at async renderForPreview (file:///home/lorenzo/applications/quarto-cli/src/command/preview/preview.ts:400:24)
    at async render (file:///home/lorenzo/applications/quarto-cli/src/command/preview/preview.ts:159:22)
    at async preview (file:///home/lorenzo/applications/quarto-cli/src/command/preview/preview.ts:176:18)
    at async Command.fn (file:///home/lorenzo/applications/quarto-cli/src/command/preview/cmd.ts:356:7)
    at async Command.execute (file:///home/lorenzo/applications/quarto-cli/src/vendor/deno.land/x/cliffy@v0.25.4/command/command.ts:1790:7)
    at async quarto (file:///home/lorenzo/applications/quarto-cli/src/quarto.ts:126:3)
    at async file:///home/lorenzo/applications/quarto-cli/src/quarto.ts:158:5

I removed anything related to tex from my machine, and re-installed tlmgr, quarto-cli and run quarto tools install tinytex. Currently the version of Quarto is the 99.9.9, and I have R version 4.1.2 and RStudio version 2023.03.1+446. The output of quarto check is this:

[✓] Checking versions of quarto binary dependencies...
      Pandoc version 3.1.2: OK
      Dart Sass version 1.55.0: OK
      Deno version 1.33.2: OK
[✓] Checking versions of quarto dependencies......OK
[✓] Checking Quarto installation......OK
      Version: 99.9.9
      Path: /home/lorenzo/applications/quarto-cli/package/dist/bin

[✓] Checking basic markdown render....OK

[✓] Checking Python 3 installation....OK
      Version: 3.10.6
      Path: /usr/bin/python3
      Jupyter: 5.2.0
      Kernels: python3

[✓] Checking Jupyter engine render....OK

[✓] Checking R installation...........OK
      Version: 4.1.2
      Path: /usr/lib/R
      LibPaths:
        - /home/lorenzo/R/x86_64-pc-linux-gnu-library/4.1
        - /usr/local/lib/R/site-library
        - /usr/lib/R/site-library
        - /usr/lib/R/library
      knitr: 1.42
      rmarkdown: 2.21

[✓] Checking Knitr engine render......OK

If I remove the content of include-in-header:, the PDF is generated without issues. The content of the log file is this:

This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdflatex 2023.5.24)  24 MAY 2023 10:38
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**tmp.tex
(./tmp.tex
LaTeX2e <2022-11-01> patch level 1
L3 programming layer <2023-05-15> (/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/koma-script/scrartcl.cls
Document Class: scrartcl 2023/04/24 v3.40 KOMA-Script document class (article)
(/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/koma-script/scrkbase.sty
Package: scrkbase 2023/04/24 v3.40 KOMA-Script package (KOMA-Script-dependent basics and keyval usage)
(/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/koma-script/scrbase.sty
Package: scrbase 2023/04/24 v3.40 KOMA-Script package (KOMA-Script-independent basics and keyval usage)
(/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/koma-script/scrlfile.sty
Package: scrlfile 2023/04/24 v3.40 KOMA-Script package (file load hooks)
(/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/koma-script/scrlfile-hook.sty
Package: scrlfile-hook 2023/04/24 v3.40 KOMA-Script package (using LaTeX hooks)
(/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/koma-script/scrlogo.sty
Package: scrlogo 2023/04/24 v3.40 KOMA-Script package (logo)
))) (/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 2022/05/29 v1.15 key=value parser (DPC)
\KV@toks@=\toks16
)
Applying: [2021/05/01] Usage of raw or classic option list on input line 252.
Already applied: [0000/00/00] Usage of raw or classic option list on input line 368.
)) (/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/koma-script/tocbasic.sty
Package: tocbasic 2023/04/24 v3.40 KOMA-Script package (handling toc-files)
\scr@dte@tocline@numberwidth=\skip48
\scr@dte@tocline@numbox=\box51
)
Package tocbasic Info: omitting babel extension for `toc'
(tocbasic)             because of feature `nobabel' available
(tocbasic)             for `toc' on input line 133.
Class scrartcl Info: File `scrsize11pt.clo' used instead of
(scrartcl)           file `scrsize11.clo' to setup font sizes on input line 2418.
(/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/koma-script/scrsize11pt.clo
File: scrsize11pt.clo 2023/04/24 v3.40 KOMA-Script font size class option (11pt)
) (/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/koma-script/typearea.sty
Package: typearea 2023/04/24 v3.40 KOMA-Script package (type area)
\ta@bcor=\skip49
\ta@div=\count185
Package typearea Info: You've used standard option `letterpaper'.
(typearea)             This is correct!
(typearea)             Internally I'm using `paper=letter'.
(typearea)             If you'd like to set the option with \KOMAoptions,
(typearea)             you'd have to use `paper=letter' there
(typearea)             instead of `letterpaper', too.
\ta@hblk=\skip50
\ta@vblk=\skip51
\ta@temp=\skip52
\footheight=\skip53
Package typearea Info: These are the values describing the layout:
(typearea)             DIV  = 11
(typearea)             BCOR = 0.0pt
(typearea)             \paperwidth      = 614.295pt
(typearea)              \textwidth      = 446.76004pt
(typearea)              DIV departure   = -14%
(typearea)              \evensidemargin = 11.49748pt
(typearea)              \oddsidemargin  = 11.49748pt
(typearea)             \paperheight     = 794.96999pt
(typearea)              \textheight     = 582.20026pt
(typearea)              \topmargin      = -37.40001pt
(typearea)              \headheight     = 17.0pt
(typearea)              \headsep        = 20.40001pt
(typearea)              \topskip        = 11.0pt
(typearea)              \footskip       = 47.6pt
(typearea)              \baselineskip   = 13.6pt
(typearea)              on input line 1798.
)
\c@part=\count186
\c@section=\count187
\c@subsection=\count188
\c@subsubsection=\count189
\c@paragraph=\count190
\c@subparagraph=\count191
\scr@dte@section@maxnumwidth=\skip54
Class scrartcl Info: using compatibility default `runin=bysign'
(scrartcl)           for `\section on input line 5046.
Class scrartcl Info: using compatibility default `afterindent=bysign'
(scrartcl)           for `\section on input line 5046.
\scr@dte@part@maxnumwidth=\skip55
Class scrartcl Info: using compatibility default `afterindent=false'
(scrartcl)           for `\part on input line 5054.
\scr@dte@subsection@maxnumwidth=\skip56
Class scrartcl Info: using compatibility default `runin=bysign'
(scrartcl)           for `\subsection on input line 5064.
Class scrartcl Info: using compatibility default `afterindent=bysign'
(scrartcl)           for `\subsection on input line 5064.
\scr@dte@subsubsection@maxnumwidth=\skip57
Class scrartcl Info: using compatibility default `runin=bysign'
(scrartcl)           for `\subsubsection on input line 5074.
Class scrartcl Info: using compatibility default `afterindent=bysign'
(scrartcl)           for `\subsubsection on input line 5074.
\scr@dte@paragraph@maxnumwidth=\skip58
Class scrartcl Info: using compatibility default `runin=bysign'
(scrartcl)           for `\paragraph on input line 5085.
Class scrartcl Info: using compatibility default `afterindent=bysign'
(scrartcl)           for `\paragraph on input line 5085.
\scr@dte@subparagraph@maxnumwidth=\skip59
Class scrartcl Info: using compatibility default `runin=bysign'
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Class scrartcl Info: using compatibility default `afterindent=bysign'
(scrartcl)           for `\subparagraph on input line 5095.
\abovecaptionskip=\skip60
\belowcaptionskip=\skip61
\c@pti@nb@sid@b@x=\box52
Package tocbasic Info: omitting babel extension for `lof'
(tocbasic)             because of feature `nobabel' available
(tocbasic)             for `lof' on input line 6263.
\scr@dte@figure@maxnumwidth=\skip62
\c@figure=\count192
Package tocbasic Info: omitting babel extension for `lot'
(tocbasic)             because of feature `nobabel' available
(tocbasic)             for `lot' on input line 6279.
\scr@dte@table@maxnumwidth=\skip63
\c@table=\count193
Class scrartcl Info: Redefining `\numberline' on input line 6449.
\bibindent=\dimen140
) (/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/amsmath/amsmath.sty
Package: amsmath 2022/04/08 v2.17n AMS math features
\@mathmargin=\skip64
For additional information on amsmath, use the `?' option.
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Package: amstext 2021/08/26 v2.01 AMS text
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\c@MaxMatrixCols=\count266
\dotsspace@=\muskip16
\c@parentequation=\count267
\dspbrk@lvl=\count268
\tag@help=\toks18
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\eqnshift@=\dimen144
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\totwidth@=\dimen148
\lineht@=\dimen149
\@envbody=\toks20
\multlinegap=\skip65
\multlinetaggap=\skip66
\mathdisplay@stack=\toks21
LaTeX Info: Redefining \[ on input line 2953.
LaTeX Info: Redefining \] on input line 2954.
) (/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/amsfonts/amssymb.sty
Package: amssymb 2013/01/14 v3.01 AMS font symbols
(/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/amsfonts/amsfonts.sty
Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support
\symAMSa=\mathgroup4
\symAMSb=\mathgroup5
LaTeX Font Info:    Redeclaring math symbol \hbar on input line 98.
LaTeX Font Info:    Overwriting math alphabet `\mathfrak' in version `bold'
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)) (/home/lorenzo/.TinyTeX/texmf-dist/tex/generic/iftex/iftex.sty
Package: iftex 2022/02/03 v1.0f TeX engine tests
) (/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/base/fontenc.sty
Package: fontenc 2021/04/29 v2.0v Standard LaTeX package
) (/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/base/inputenc.sty
Package: inputenc 2021/02/14 v1.3d Input encoding file
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) (/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/base/textcomp.sty
Package: textcomp 2020/02/02 v2.0n Standard LaTeX package
) (/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/lm/lmodern.sty
Package: lmodern 2015/05/01 v1.6.1 Latin Modern Fonts
LaTeX Font Info:    Overwriting symbol font `operators' in version `normal'
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(Font)                  OML/cmm/m/it --> OML/lmm/m/it on input line 23.
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(Font)                  OMS/cmsy/m/n --> OMS/lmsy/m/n on input line 24.
LaTeX Font Info:    Overwriting symbol font `largesymbols' in version `normal'
(Font)                  OMX/cmex/m/n --> OMX/lmex/m/n on input line 25.
LaTeX Font Info:    Overwriting symbol font `operators' in version `bold'
(Font)                  OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 26.
LaTeX Font Info:    Overwriting symbol font `letters' in version `bold'
(Font)                  OML/cmm/b/it --> OML/lmm/b/it on input line 27.
LaTeX Font Info:    Overwriting symbol font `symbols' in version `bold'
(Font)                  OMS/cmsy/b/n --> OMS/lmsy/b/n on input line 28.
LaTeX Font Info:    Overwriting symbol font `largesymbols' in version `bold'
(Font)                  OMX/cmex/m/n --> OMX/lmex/m/n on input line 29.
LaTeX Font Info:    Overwriting math alphabet `\mathbf' in version `normal'
(Font)                  OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 31.
LaTeX Font Info:    Overwriting math alphabet `\mathsf' in version `normal'
(Font)                  OT1/cmss/m/n --> OT1/lmss/m/n on input line 32.
LaTeX Font Info:    Overwriting math alphabet `\mathit' in version `normal'
(Font)                  OT1/cmr/m/it --> OT1/lmr/m/it on input line 33.
LaTeX Font Info:    Overwriting math alphabet `\mathtt' in version `normal'
(Font)                  OT1/cmtt/m/n --> OT1/lmtt/m/n on input line 34.
LaTeX Font Info:    Overwriting math alphabet `\mathbf' in version `bold'
(Font)                  OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 35.
LaTeX Font Info:    Overwriting math alphabet `\mathsf' in version `bold'
(Font)                  OT1/cmss/bx/n --> OT1/lmss/bx/n on input line 36.
LaTeX Font Info:    Overwriting math alphabet `\mathit' in version `bold'
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) (/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/upquote/upquote.sty
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\MT@listname@count=\count274
(/home/lorenzo/.TinyTeX/texmf-dist/tex/latex/microtype/microtype-pdftex.def
File: microtype-pdftex.def 2023/03/13 v3.1a Definitions specific to pdftex (RS)
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)
Package microtype Info: Loading configuration file microtype.cfg.
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Package xcolor Info: Driver file: pdftex.def on input line 227.
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! LaTeX Error: Missing \begin{document}.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              

l.82 -
       \usepackage{float} 
Here is how much of TeX's memory you used:
 9081 strings out of 478037
 164262 string characters out of 5839352
 1853851 words of memory out of 5000000
 29166 multiletter control sequences out of 15000+600000
 513356 words of font info for 34 fonts, out of 8000000 for 9000
 14 hyphenation exceptions out of 8191
 108i,1n,106p,10898b,270s stack positions out of 10000i,1000n,20000p,200000b,200000s

!  ==> Fatal error occurred, no output PDF file produced!
dragonstyle commented 1 year ago

The issue is with the way you've specified include-in-header, which appears to be mixing multi-line text and yaml array syntax:

    include-in-header:
      text: |
        - \usepackage{rotating}
        - \usepackage{float}
        - \usepackage{typearea}

This should read:

    include-in-header:
      text: |
        \usepackage{rotating}
        \usepackage{float}
        \usepackage{typearea}

and all should be well.