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quarto-journals / jss

Quarto template for the Journal of Statistical Software
GNU General Public License v3.0
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doc fails to knit with kableExtra styled table when > 1 author #9

Open egouldo opened 1 year ago

egouldo commented 1 year ago

Issue Description

quarto document using jss template and Kable table styled with kableExtra fails to knit when there is more than one author.

---
title: "Failed knit when two authors listed"
format:
    jss-pdf:
        keep-tex: true
        preamble: |
          \usepackage{amsmath, amsfonts, booktabs, caption, longtable, pdflscape}
author:
  - name: 'Author 1'
  - name: 'author 2'
abstract: "BLAH"
keywords: [JSS, style guide, comma-separated, not capitalized, R]
keywords-formatted: [JSS, style guide, comma-separated, not capitalized, "[R]{.proglang}"]
editor: 
  markdown: 
    wrap: 72
---

```{r}
#| results: asis
#| echo: false
suppressPackageStartupMessages(library(tidyverse))
library(knitr)
data(cars)
cars2 <- cars %>% 
  group_by(speed) %>% 
  summarise(mean_dist = mean(dist))
kable(cars2, escape = FALSE, col.names = c("speed", "mean distance")) %>% 
kableExtra::column_spec(2, width = "10em")  

_Console Error Output_

```latex
compilation failed- error
Undefined control sequence.
<template> ...@setup \CT@row@color \CT@cell@color 
                                                  \CT@do@color \endgroup \@t...
l.200 \begin{document}

Document knits with > 1 author only when additional styling removed

---
title: "Successful knit with multiple authors, and additional table styling removed"
format:
    jss-pdf:
        keep-tex: true
        preamble: |
          \usepackage{amsmath, amsfonts, booktabs, caption, longtable, pdflscape}
author:
  - name: 'Author 1'
  - name: 'Author 2'
abstract: "BLAH"
keywords: [JSS, style guide, comma-separated, not capitalized, R]
keywords-formatted: [JSS, style guide, comma-separated, not capitalized, "[R]{.proglang}"]
editor: 
  markdown: 
    wrap: 72
---

```{r}
#| results: asis
#| echo: false
suppressPackageStartupMessages(library(tidyverse))
library(knitr)
data(cars)
cars2 <- cars %>% 
  group_by(speed) %>% 
  summarise(mean_dist = mean(dist))
kable(cars2, escape = FALSE, col.names = c("speed", "mean distance"))
![image](https://user-images.githubusercontent.com/8400682/199370535-85ec6596-f354-4499-87f9-7f710f855d21.png)

## Expected Output (But only 1 author....)

````r
---
title: "Failed knit with "
format:
    jss-pdf:
        keep-tex: true
        preamble: |
          \usepackage{amsmath, amsfonts, booktabs, caption, longtable, pdflscape}
author:
  - name: 'Author 1'
abstract: "BLAH"
keywords: [JSS, style guide, comma-separated, not capitalized, R]
keywords-formatted: [JSS, style guide, comma-separated, not capitalized, "[R]{.proglang}"]
editor: 
  markdown: 
    wrap: 72
---

```{r}
#| results: asis
#| echo: false
suppressPackageStartupMessages(library(tidyverse))
library(knitr)
data(cars)
cars2 <- cars %>% 
  group_by(speed) %>% 
  summarise(mean_dist = mean(dist))
kable(cars2, escape = FALSE, col.names = c("speed", "mean distance")) %>% 
kableExtra::column_spec(2, width = "10em")  

![image](https://user-images.githubusercontent.com/8400682/199370643-60629c27-95ff-4759-ab86-0a3807dd913e.png)

**Session Info**

```r
─ Session info ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.2.1 (2022-06-23)
 os       macOS Monterey 12.6
 system   aarch64, darwin20
 ui       RStudio
 language (EN)
 collate  en_AU.UTF-8
 ctype    en_AU.UTF-8
 tz       Australia/Melbourne
 date     2022-11-02
 rstudio  2022.07.2+576 Spotted Wakerobin (desktop)
 pandoc   2.19.2 @ /Applications/RStudio.app/Contents/MacOS/quarto/bin/tools/ (via rmarkdown)

─ Packages ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
 package       * version date (UTC) lib source
 assertthat      0.2.1   2019-03-21 [1] CRAN (R 4.2.0)
 backports       1.4.1   2021-12-13 [1] CRAN (R 4.2.0)
 broom           1.0.1   2022-08-29 [1] CRAN (R 4.2.0)
 cachem          1.0.6   2021-08-19 [1] CRAN (R 4.2.0)
 callr           3.7.2   2022-08-22 [1] CRAN (R 4.2.0)
 cellranger      1.1.0   2016-07-27 [1] CRAN (R 4.2.0)
 cli             3.4.1   2022-09-23 [1] CRAN (R 4.2.0)
 colorspace      2.0-3   2022-02-21 [1] CRAN (R 4.2.0)
 crayon          1.5.2   2022-09-29 [1] CRAN (R 4.2.0)
 DBI             1.1.3   2022-06-18 [1] CRAN (R 4.2.0)
 dbplyr          2.2.1   2022-06-27 [1] CRAN (R 4.2.0)
 devtools        2.4.5   2022-10-11 [1] CRAN (R 4.2.0)
 digest          0.6.30  2022-10-18 [1] CRAN (R 4.2.0)
 dplyr         * 1.0.10  2022-09-01 [1] CRAN (R 4.2.0)
 ellipsis        0.3.2   2021-04-29 [1] CRAN (R 4.2.0)
 evaluate        0.17    2022-10-07 [1] CRAN (R 4.2.0)
 fansi           1.0.3   2022-03-24 [1] CRAN (R 4.2.0)
 fastmap         1.1.0   2021-01-25 [1] CRAN (R 4.2.0)
 forcats       * 0.5.2   2022-08-19 [1] CRAN (R 4.2.0)
 fs              1.5.2   2021-12-08 [1] CRAN (R 4.2.0)
 gargle          1.2.1   2022-09-08 [1] CRAN (R 4.2.0)
 generics        0.1.3   2022-07-05 [1] CRAN (R 4.2.0)
 ggplot2       * 3.3.6   2022-05-03 [1] CRAN (R 4.2.0)
 glue            1.6.2   2022-02-24 [1] CRAN (R 4.2.0)
 googledrive     2.0.0   2021-07-08 [1] CRAN (R 4.2.0)
 googlesheets4   1.0.1   2022-08-13 [1] CRAN (R 4.2.0)
 gtable          0.3.1   2022-09-01 [1] CRAN (R 4.2.0)
 haven           2.5.1   2022-08-22 [1] CRAN (R 4.2.0)
 hms             1.1.2   2022-08-19 [1] CRAN (R 4.2.0)
 htmltools       0.5.3   2022-07-18 [1] CRAN (R 4.2.0)
 htmlwidgets     1.5.4   2021-09-08 [1] CRAN (R 4.2.0)
 httpuv          1.6.6   2022-09-08 [1] CRAN (R 4.2.0)
 httr            1.4.4   2022-08-17 [1] CRAN (R 4.2.0)
 jsonlite        1.8.3   2022-10-21 [1] CRAN (R 4.2.0)
 kableExtra      1.3.4   2021-02-20 [1] CRAN (R 4.2.0)
 knitr         * 1.40    2022-08-24 [1] CRAN (R 4.2.0)
 later           1.3.0   2021-08-18 [1] CRAN (R 4.2.0)
 lifecycle       1.0.3   2022-10-07 [1] CRAN (R 4.2.0)
 lubridate       1.8.0   2021-10-07 [1] CRAN (R 4.2.0)
 magrittr        2.0.3   2022-03-30 [1] CRAN (R 4.2.0)
 memoise         2.0.1   2021-11-26 [1] CRAN (R 4.2.0)
 mime            0.12    2021-09-28 [1] CRAN (R 4.2.0)
 miniUI          0.1.1.1 2018-05-18 [1] CRAN (R 4.2.0)
 modelr          0.1.9   2022-08-19 [1] CRAN (R 4.2.0)
 munsell         0.5.0   2018-06-12 [1] CRAN (R 4.2.0)
 pillar          1.8.1   2022-08-19 [1] CRAN (R 4.2.0)
 pkgbuild        1.3.1   2021-12-20 [1] CRAN (R 4.2.0)
 pkgconfig       2.0.3   2019-09-22 [1] CRAN (R 4.2.0)
 pkgload         1.3.1   2022-10-28 [1] CRAN (R 4.2.0)
 prettyunits     1.1.1   2020-01-24 [1] CRAN (R 4.2.0)
 processx        3.8.0   2022-10-26 [1] CRAN (R 4.2.0)
 profvis         0.3.7   2020-11-02 [1] CRAN (R 4.2.0)
 promises        1.2.0.1 2021-02-11 [1] CRAN (R 4.2.0)
 ps              1.7.2   2022-10-26 [1] CRAN (R 4.2.0)
 purrr         * 0.3.5   2022-10-06 [1] CRAN (R 4.2.0)
 R6              2.5.1   2021-08-19 [1] CRAN (R 4.2.0)
 Rcpp            1.0.9   2022-07-08 [1] CRAN (R 4.2.0)
 readr         * 2.1.3   2022-10-01 [1] CRAN (R 4.2.0)
 readxl          1.4.1   2022-08-17 [1] CRAN (R 4.2.0)
 remotes         2.4.2   2021-11-30 [1] CRAN (R 4.2.0)
 reprex          2.0.2   2022-08-17 [1] CRAN (R 4.2.0)
 rlang           1.0.6   2022-09-24 [1] CRAN (R 4.2.0)
 rmarkdown       2.17    2022-10-07 [1] CRAN (R 4.2.0)
 rstudioapi      0.14    2022-08-22 [1] CRAN (R 4.2.0)
 rvest           1.0.3   2022-08-19 [1] CRAN (R 4.2.0)
 scales          1.2.1   2022-08-20 [1] CRAN (R 4.2.0)
 sessioninfo     1.2.2   2021-12-06 [1] CRAN (R 4.2.0)
 shiny           1.7.3   2022-10-25 [1] CRAN (R 4.2.0)
 stringi         1.7.8   2022-07-11 [1] CRAN (R 4.2.0)
 stringr       * 1.4.1   2022-08-20 [1] CRAN (R 4.2.0)
 svglite         2.1.0   2022-02-03 [1] CRAN (R 4.2.0)
 systemfonts     1.0.4   2022-02-11 [1] CRAN (R 4.2.0)
 tibble        * 3.1.8   2022-07-22 [1] CRAN (R 4.2.0)
 tidyr         * 1.2.1   2022-09-08 [1] CRAN (R 4.2.0)
 tidyselect      1.2.0   2022-10-10 [1] CRAN (R 4.2.0)
 tidyverse     * 1.3.2   2022-07-18 [1] CRAN (R 4.2.0)
 tzdb            0.3.0   2022-03-28 [1] CRAN (R 4.2.0)
 urlchecker      1.0.1   2021-11-30 [1] CRAN (R 4.2.0)
 usethis         2.1.6   2022-05-25 [1] CRAN (R 4.2.0)
 utf8            1.2.2   2021-07-24 [1] CRAN (R 4.2.0)
 vctrs           0.5.0   2022-10-22 [1] CRAN (R 4.2.0)
 viridisLite     0.4.1   2022-08-22 [1] CRAN (R 4.2.0)
 webshot         0.5.4   2022-09-26 [1] CRAN (R 4.2.0)
 withr           2.5.0   2022-03-03 [1] CRAN (R 4.2.0)
 xfun            0.34    2022-10-18 [1] CRAN (R 4.2.0)
 xml2            1.3.3   2021-11-30 [1] CRAN (R 4.2.0)
 xtable          1.8-4   2019-04-21 [1] CRAN (R 4.2.0)
 yaml            2.3.6   2022-10-18 [1] CRAN (R 4.2.0)

 [1] /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library

────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
dragonstyle commented 1 year ago

I think this issue from the rticles version of this template has the best summary of the issue and potential workaround for the time being:

https://github.com/rstudio/rticles/issues/497