In binary segmentation (camvid).ipynb Example. I'm try to use my custom dataset to find patches. But I didn't getting my masks, when I load data using, provided function.

[naseemap47]

In binary segmentation (camvid).ipynb Example. Link: https://github.com/qubvel/segmentation_models/blob/master/examples/binary%20segmentation%20(camvid).ipynb I'm try to use my custom dataset to find patches. But I didn't getting my masks, when I load data using, provided function

Code:

import os
os.environ['CUDA_VISIBLE_DEVICES'] = '0'

import cv2
import keras
import numpy as np
import matplotlib.pyplot as plt

DATA_DIR = '/content/drive/MyDrive/Image_Segmentation_Patch_segmentationModels/Dataset/'

x_train_dir = os.path.join(DATA_DIR, 'images/training')
y_train_dir = os.path.join(DATA_DIR, 'annotations/training')

x_valid_dir = os.path.join(DATA_DIR, 'images/validation')
y_valid_dir = os.path.join(DATA_DIR, 'annotations/validation')

# helper function for data visualization
def visualize(**images):
    """PLot images in one row."""
    n = len(images)
    plt.figure(figsize=(16, 5))
    for i, (name, image) in enumerate(images.items()):
        plt.subplot(1, n, i + 1)
        plt.xticks([])
        plt.yticks([])
        plt.title(' '.join(name.split('_')).title())
        plt.imshow(image)
    plt.show()

# helper function for data visualization    
def denormalize(x):
    """Scale image to range 0..1 for correct plot"""
    x_max = np.percentile(x, 98)
    x_min = np.percentile(x, 2)    
    x = (x - x_min) / (x_max - x_min)
    x = x.clip(0, 1)
    return x

# classes for data loading and preprocessing
class Dataset:
    """CamVid Dataset. Read images, apply augmentation and preprocessing transformations.

    Args:
        images_dir (str): path to images folder
        masks_dir (str): path to segmentation masks folder
        class_values (list): values of classes to extract from segmentation mask
        augmentation (albumentations.Compose): data transfromation pipeline 
            (e.g. flip, scale, etc.)
        preprocessing (albumentations.Compose): data preprocessing 
            (e.g. noralization, shape manipulation, etc.)

    """

    CLASSES = ['patch']

    def __init__(
            self, 
            images_dir, 
            masks_dir, 
            classes=None, 
            augmentation=None, 
            preprocessing=None,
    ):
        self.ids = os.listdir(images_dir)
        self.images_fps = [os.path.join(images_dir, image_id) for image_id in self.ids]
        self.masks_fps = [os.path.join(masks_dir, image_id) for image_id in self.ids]

        # convert str names to class values on masks
        self.class_values = [self.CLASSES.index(cls.lower()) for cls in classes]

        self.augmentation = augmentation
        self.preprocessing = preprocessing

    def __getitem__(self, i):

        # read data
        image = cv2.imread(self.images_fps[i])
        image = cv2.cvtColor(image, cv2.COLOR_BGR2RGB)
        mask = cv2.imread(self.masks_fps[i], 0)

        # extract certain classes from mask (e.g. cars)
        masks = [(mask == v) for v in self.class_values]
        mask = np.stack(masks, axis=-1).astype('float')

        # add background if mask is not binary
        if mask.shape[-1] != 1:
            background = 1 - mask.sum(axis=-1, keepdims=True)
            mask = np.concatenate((mask, background), axis=-1)

        # apply augmentations
        if self.augmentation:
            sample = self.augmentation(image=image, mask=mask)
            image, mask = sample['image'], sample['mask']

        # apply preprocessing
        if self.preprocessing:
            sample = self.preprocessing(image=image, mask=mask)
            image, mask = sample['image'], sample['mask']

        return image, mask

    def __len__(self):
        return len(self.ids)

class Dataloder(keras.utils.Sequence):
    """Load data from dataset and form batches

    Args:
        dataset: instance of Dataset class for image loading and preprocessing.
        batch_size: Integet number of images in batch.
        shuffle: Boolean, if `True` shuffle image indexes each epoch.
    """

    def __init__(self, dataset, batch_size=1, shuffle=False):
        self.dataset = dataset
        self.batch_size = batch_size
        self.shuffle = shuffle
        self.indexes = np.arange(len(dataset))

        self.on_epoch_end()

    def __getitem__(self, i):

        # collect batch data
        start = i * self.batch_size
        stop = (i + 1) * self.batch_size
        data = []
        for j in range(start, stop):
            data.append(self.dataset[j])

        # transpose list of lists
        batch = [np.stack(samples, axis=0) for samples in zip(*data)]

        return batch

    def __len__(self):
        """Denotes the number of batches per epoch"""
        return len(self.indexes) // self.batch_size

    def on_epoch_end(self):
        """Callback function to shuffle indexes each epoch"""
        if self.shuffle:
            self.indexes = np.random.permutation(self.indexes)

# Lets look at data we have
dataset = Dataset(x_train_dir, y_train_dir, classes=['patch'])
print(mask)

output: [0.]

insted of:

[[[0, 0, 0],
        [0, 0, 0],
        [0, 0, 0],
        ...,
        [0, 0, 0],
        [0, 0, 0],
        [0, 0, 0]],

       [[0, 0, 0],
        [0, 0, 0],
        [0, 0, 0],
        ...,
        [0, 0, 0],
        [0, 0, 0],
        [0, 0, 0]],

       [[0, 0, 0],
        [0, 0, 0],
        [0, 0, 0],
        ...,
        [0, 0, 0],
        [0, 0, 0],
        [0, 0, 0]],

       ...,

       [[0, 0, 0],
        [0, 0, 0],
        [0, 0, 0],
        ...,
        [0, 0, 0],
        [0, 0, 0],
        [0, 0, 0]],

       [[0, 0, 0],
        [0, 0, 0],
        [0, 0, 0],
        ...,
        [0, 0, 0],
        [0, 0, 0],
        [0, 0, 0]],

       [[0, 0, 0],
        [0, 0, 0],
        [0, 0, 0],
        ...,
        [0, 0, 0],
        [0, 0, 0],
        [0, 0, 0]]], dtype=uint8)

[nataliameira]

Hi @naseemap47, Which version of tensorflow did you use?

[naseemap47]

Sorry, I didn't remember. I did this in very long back.