search

queryverse / Queryverse.jl

A meta package for data science in julia
Other
151 stars 13 forks source link

Cannot `add Queryverse` on new environment #49

Open ClaudMor opened 3 years ago

ClaudMor commented 3 years ago

Hello,

I encountered some errors while trying to add Queryverse in an environment I am currently using, so I made a new one but unfortunately the same error appeared again (I'm using Julia 1.6.0). Specifically, I am interested in using the load function.

So I created a new env:

(@v1.6) pkg> activate  .
  Activating new environment at `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Project.toml`

(temporary_env) pkg> st
      Status `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Project.toml` (empty project)

And installed Queryverse:

(temporary_env) pkg> add Queryverse
    Updating registry at `C:\Users\claud\.julia\registries\General`
    Updating git-repo `https://github.com/JuliaRegistries/General.git`
   Resolving package versions...
    Updating `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Project.toml`
  [612083be] + Queryverse v0.6.2
    Updating `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Manifest.toml`
  [69666777] + Arrow v0.2.4
  [b99e7846] + BinaryProvider v0.5.10
  [5d742f6a] + CSVFiles v1.0.0
  [324d7699] + CategoricalArrays v0.8.3
  [d360d2e6] + ChainRulesCore v0.9.37
  [944b1d66] + CodecZlib v0.6.0
  [6b39b394] + CodecZstd v0.7.0
  [34da2185] + Compat v3.26.0
  [8f4d0f93] + Conda v1.5.1
  [187b0558] + ConstructionBase v1.1.0
  [9a962f9c] + DataAPI v1.6.0
  [a93c6f00] + DataFrames v0.21.8
  [864edb3b] + DataStructures v0.18.9
  [743a1d0a] + DataTables v0.1.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [e7dc6d0d] + DataValues v0.4.13
  [5721bf48] + DataVoyager v1.0.0
  [497a8b3b] + DoubleFloats v1.1.18
  [a1bb12fb] + Electron v2.0.1
  [89b67f3b] + ExcelFiles v1.0.0
  [c04bee98] + ExcelReaders v0.11.0
  [e2ba6199] + ExprTools v0.1.3
  [8f5d6c58] + EzXML v1.1.0
  [b675d258] + FeatherFiles v0.8.1
  [409f5150] + FeatherLib v0.2.0
  [5789e2e9] + FileIO v1.6.5
  [8fc22ac5] + FilePaths v0.8.2
  [48062228] + FilePathsBase v0.9.10
  [53afe959] + FlatBuffers v0.5.4
  [01680d73] + GenericSVD v0.3.0
  [c145ed77] + GenericSchur v0.5.0
  [c27321d9] + Glob v1.3.0
  [cd3eb016] + HTTP v0.8.19
  [83e8ac13] + IniFile v0.5.0
  [d8418881] + Intervals v1.5.0
  [41ab1584] + InvertedIndices v1.0.0
  [1c8ee90f] + IterableTables v1.0.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.2.0
  [682c06a0] + JSON v0.21.1
  [7d188eb4] + JSONSchema v0.3.3
  [1914dd2f] + MacroTools v0.5.6
  [739be429] + MbedTLS v1.0.3
  [f9f48841] + MemPool v0.2.0
  [e1d29d7a] + Missings v0.4.5
  [78c3b35d] + Mocking v0.7.1
  [2bd173c7] + NodeJS v1.1.2
  [4d1e1d77] + Nullables v1.0.0
  [bac558e1] + OrderedCollections v1.4.0
  [d96e819e] + Parameters v0.12.2
  [626c502c] + Parquet v0.4.0
  [46a55296] + ParquetFiles v0.2.0
  [69de0a69] + Parsers v1.1.0
  [f27b6e38] + Polynomials v2.0.5
  [2dfb63ee] + PooledArrays v0.5.3
  [3349acd9] + ProtoBuf v0.8.0
  [438e738f] + PyCall v1.92.2
  [be4d8f0f] + Quadmath v0.5.5
  [1a8c2f83] + Query v1.0.0
  [2aef5ad7] + QueryOperators v0.9.3
  [612083be] + Queryverse v0.6.2
  [988b38a3] + ReadOnlyArrays v0.1.1
  [d71aba96] + ReadStat v1.0.2
  [3cdcf5f2] + RecipesBase v1.1.1
  [189a3867] + Reexport v0.2.0
  [ae029012] + Requires v1.1.3
  [efcf1570] + Setfield v0.7.0
  [59d4ed8c] + Snappy v0.3.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [276daf66] + SpecialFunctions v1.3.0
  [1463e38c] + StatFiles v0.8.0
  [856f2bd8] + StructTypes v1.5.2
  [5e66a065] + TableShowUtils v0.2.5
  [3783bdb8] + TableTraits v1.0.1
  [382cd787] + TableTraitsUtils v1.0.1
  [bd369af6] + Tables v1.4.1
  [e0df1984] + TextParse v1.0.1
  [8d9c9c80] + Thrift v0.6.2
  [f269a46b] + TimeZones v1.5.3
  [3bb67fe8] + TranscodingStreams v0.9.5
  [30578b45] + URIParser v0.4.1
  [3a884ed6] + UnPack v1.0.2
  [239c3e63] + Vega v2.1.1
  [112f6efa] + VegaLite v2.4.0
  [81def892] + VersionParsing v1.2.0
  [ea10d353] + WeakRefStrings v0.6.2
  [fdbf4ff8] + XLSX v0.7.6
  [a5390f91] + ZipFile v0.9.3
  [94ce4f54] + Libiconv_jll v1.16.0+7
  [efe28fd5] + OpenSpecFun_jll v0.5.3+4
  [a4dc8951] + ReadStat_jll v1.1.1+0
  [02c8fc9c] + XML2_jll v2.9.11+0
  [3161d3a3] + Zstd_jll v1.4.8+0
  [0dad84c5] + ArgTools
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8bb1440f] + DelimitedFiles
  [8ba89e20] + Distributed
  [f43a241f] + Downloads
  [9fa8497b] + Future
  [b77e0a4c] + InteractiveUtils
  [b27032c2] + LibCURL
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [ca575930] + NetworkOptions
  [44cfe95a] + Pkg
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA
  [9e88b42a] + Serialization
  [1a1011a3] + SharedArrays
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays
  [10745b16] + Statistics
  [fa267f1f] + TOML
  [a4e569a6] + Tar
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [e66e0078] + CompilerSupportLibraries_jll
  [deac9b47] + LibCURL_jll
  [29816b5a] + LibSSH2_jll
  [c8ffd9c3] + MbedTLS_jll
  [14a3606d] + MozillaCACerts_jll
  [83775a58] + Zlib_jll
  [8e850ede] + nghttp2_jll
  [3f19e933] + p7zip_jll
Precompiling project...
  Progress [========================================>]  6/6
  ✗ CodecZlib
  ✗ Parquet
  ✗ TextParse
  ✗ CSVFiles
  ✗ ParquetFiles
  ✗ Queryverse
0 dependencies successfully precompiled in 25 seconds (91 already precompiled)
6 dependencies errored

And, as you see, precompilation failed. Indeed, it doesn't work when using Queryverse:

julia> using Queryverse
[ Info: Precompiling Queryverse [612083be-0b0f-5412-89c1-4e7c75506a58]
ERROR: LoadError: CodecZlib.jl is not installed properly, run Pkg.build("CodecZlib") and restart Julia.
Stacktrace:
 [1] error(s::String)
   @ Base .\error.jl:33
 [2] top-level scope
   @ ~\.julia\packages\CodecZlib\5t9zO\src\CodecZlib.jl:34
 [3] include
   @ .\Base.jl:386 [inlined]
 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
   @ Base .\loading.jl:1213
 [5] top-level scope
   @ none:1
 [6] eval
   @ .\boot.jl:360 [inlined]
 [7] eval(x::Expr)
   @ Base.MainInclude .\client.jl:446
 [8] top-level scope
   @ none:1
in expression starting at C:\Users\claud\.julia\packages\CodecZlib\5t9zO\src\CodecZlib.jl:1
ERROR: LoadError: Failed to precompile CodecZlib [944b1d66-785c-5afd-91f1-9de20f533193] to C:\Users\claud\.julia\compiled\v1.6\CodecZlib\jl_A729.tmp.
Stacktrace:
  [1] error(s::String)
    @ Base .\error.jl:33
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
    @ Base .\loading.jl:1360
  [3] compilecache(pkg::Base.PkgId, path::String)
    @ Base .\loading.jl:1306
  [4] _require(pkg::Base.PkgId)
    @ Base .\loading.jl:1021
  [5] require(uuidkey::Base.PkgId)
    @ Base .\loading.jl:914
  [6] require(into::Module, mod::Symbol)
    @ Base .\loading.jl:901
  [7] include
    @ .\Base.jl:386 [inlined]
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
    @ Base .\loading.jl:1213
  [9] top-level scope
    @ none:1
 [10] eval
    @ .\boot.jl:360 [inlined]
 [11] eval(x::Expr)
    @ Base.MainInclude .\client.jl:446
 [12] top-level scope
    @ none:1
in expression starting at C:\Users\claud\.julia\packages\TextParse\dv6SU\src\TextParse.jl:1
ERROR: LoadError: Failed to precompile TextParse [e0df1984-e451-5cb5-8b61-797a481e67e3] to C:\Users\claud\.julia\compiled\v1.6\TextParse\jl_A610.tmp.
Stacktrace:
  [1] error(s::String)
    @ Base .\error.jl:33
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
    @ Base .\loading.jl:1360
  [3] compilecache(pkg::Base.PkgId, path::String)
    @ Base .\loading.jl:1306
  [4] _require(pkg::Base.PkgId)
    @ Base .\loading.jl:1021
  [5] require(uuidkey::Base.PkgId)
    @ Base .\loading.jl:914
  [6] require(into::Module, mod::Symbol)
    @ Base .\loading.jl:901
  [7] include
    @ .\Base.jl:386 [inlined]
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
    @ Base .\loading.jl:1213
  [9] top-level scope
    @ none:1
 [10] eval
    @ .\boot.jl:360 [inlined]
 [11] eval(x::Expr)
    @ Base.MainInclude .\client.jl:446
 [12] top-level scope
    @ none:1
in expression starting at C:\Users\claud\.julia\packages\CSVFiles\C68zw\src\CSVFiles.jl:1
ERROR: LoadError: Failed to precompile CSVFiles [5d742f6a-9f54-50ce-8119-2520741973ca] to C:\Users\claud\.julia\compiled\v1.6\CSVFiles\jl_A4F7.tmp.
Stacktrace:
  [1] error(s::String)
    @ Base .\error.jl:33
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
    @ Base .\loading.jl:1360
  [3] compilecache(pkg::Base.PkgId, path::String)
    @ Base .\loading.jl:1306
  [4] _require(pkg::Base.PkgId)
    @ Base .\loading.jl:1021
  [5] require(uuidkey::Base.PkgId)
    @ Base .\loading.jl:914
  [6] require(into::Module, mod::Symbol)
    @ Base .\loading.jl:901
  [7] include
    @ .\Base.jl:386 [inlined]
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
    @ Base .\loading.jl:1213
  [9] top-level scope
    @ none:1
 [10] eval
    @ .\boot.jl:360 [inlined]
 [11] eval(x::Expr)
    @ Base.MainInclude .\client.jl:446
 [12] top-level scope
    @ none:1
in expression starting at C:\Users\claud\.julia\packages\Queryverse\XPALb\src\Queryverse.jl:1
ERROR: Failed to precompile Queryverse [612083be-0b0f-5412-89c1-4e7c75506a58] to C:\Users\claud\.julia\compiled\v1.6\Queryverse\jl_99F1.tmp.
Stacktrace:
 [1] error(s::String)
   @ Base .\error.jl:33
 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
   @ Base .\loading.jl:1360
 [3] compilecache(pkg::Base.PkgId, path::String)
   @ Base .\loading.jl:1306
 [4] _require(pkg::Base.PkgId)
   @ Base .\loading.jl:1021
 [5] require(uuidkey::Base.PkgId)
   @ Base .\loading.jl:914
 [6] require(into::Module, mod::Symbol)
   @ Base .\loading.jl:901

Moreover, by reading the documentation of the load function, I see that it suffices to have FileIO and CSVFiles installed. Unfortunately, CSVFiles gives an error similar to Queryverse. In the same environment as before, I installed FileIO and CSVFIles:

(temporary_env) pkg> add FileIO
   Resolving package versions...
    Updating `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Project.toml`
  [5789e2e9] + FileIO v1.6.5
  No Changes to `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Manifest.toml`

(temporary_env) pkg> add CSVFiles
   Resolving package versions...
    Updating `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Project.toml`
  [5d742f6a] + CSVFiles v1.0.0
  No Changes to `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Manifest.toml`

I can using FileIO:

julia> using FileIO

But using CSVFiles gives the following error:

julia> using CSVFiles
[ Info: Precompiling CSVFiles [5d742f6a-9f54-50ce-8119-2520741973ca]
ERROR: LoadError: CodecZlib.jl is not installed properly, run Pkg.build("CodecZlib") and restart Julia.
Stacktrace:
 [1] error(s::String)
   @ Base .\error.jl:33
 [2] top-level scope
   @ ~\.julia\packages\CodecZlib\5t9zO\src\CodecZlib.jl:34
 [3] include
   @ .\Base.jl:386 [inlined]
 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
   @ Base .\loading.jl:1213
 [5] top-level scope
   @ none:1
 [6] eval
   @ .\boot.jl:360 [inlined]
 [7] eval(x::Expr)
   @ Base.MainInclude .\client.jl:446
 [8] top-level scope
   @ none:1
in expression starting at C:\Users\claud\.julia\packages\CodecZlib\5t9zO\src\CodecZlib.jl:1
ERROR: LoadError: Failed to precompile CodecZlib [944b1d66-785c-5afd-91f1-9de20f533193] to C:\Users\claud\.julia\compiled\v1.6\CodecZlib\jl_C565.tmp.
Stacktrace:
  [1] error(s::String)
    @ Base .\error.jl:33
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
    @ Base .\loading.jl:1360
  [3] compilecache(pkg::Base.PkgId, path::String)
    @ Base .\loading.jl:1306
  [4] _require(pkg::Base.PkgId)
    @ Base .\loading.jl:1021
  [5] require(uuidkey::Base.PkgId)
    @ Base .\loading.jl:914
  [6] require(into::Module, mod::Symbol)
    @ Base .\loading.jl:901
  [7] include
    @ .\Base.jl:386 [inlined]
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
    @ Base .\loading.jl:1213
  [9] top-level scope
    @ none:1
 [10] eval
    @ .\boot.jl:360 [inlined]
 [11] eval(x::Expr)
    @ Base.MainInclude .\client.jl:446
 [12] top-level scope
    @ none:1
in expression starting at C:\Users\claud\.julia\packages\TextParse\dv6SU\src\TextParse.jl:1
ERROR: LoadError: Failed to precompile TextParse [e0df1984-e451-5cb5-8b61-797a481e67e3] to C:\Users\claud\.julia\compiled\v1.6\TextParse\jl_C44C.tmp.
Stacktrace:
  [1] error(s::String)
    @ Base .\error.jl:33
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
    @ Base .\loading.jl:1360
  [3] compilecache(pkg::Base.PkgId, path::String)
    @ Base .\loading.jl:1306
  [4] _require(pkg::Base.PkgId)
    @ Base .\loading.jl:1021
  [5] require(uuidkey::Base.PkgId)
    @ Base .\loading.jl:914
  [6] require(into::Module, mod::Symbol)
    @ Base .\loading.jl:901
  [7] include
    @ .\Base.jl:386 [inlined]
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
    @ Base .\loading.jl:1213
  [9] top-level scope
    @ none:1
 [10] eval
    @ .\boot.jl:360 [inlined]
 [11] eval(x::Expr)
    @ Base.MainInclude .\client.jl:446
 [12] top-level scope
    @ none:1
in expression starting at C:\Users\claud\.julia\packages\CSVFiles\C68zw\src\CSVFiles.jl:1
ERROR: Failed to precompile CSVFiles [5d742f6a-9f54-50ce-8119-2520741973ca] to C:\Users\claud\.julia\compiled\v1.6\CSVFiles\jl_C359.tmp.
Stacktrace:
 [1] error(s::String)
   @ Base .\error.jl:33
 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
   @ Base .\loading.jl:1360
 [3] compilecache(pkg::Base.PkgId, path::String)
   @ Base .\loading.jl:1306
 [4] _require(pkg::Base.PkgId)
   @ Base .\loading.jl:1021
 [5] require(uuidkey::Base.PkgId)
   @ Base .\loading.jl:914
 [6] require(into::Module, mod::Symbol)
   @ Base .\loading.jl:901

So how can I properly install Queryverse or, if my interpretation of the documentation is correct, exclusively FileIO and CSVFiles ?

Thank you

eo1989 commented 3 years ago

I too fail to precompile Queryverse and its deps, specifically ExcelReaders and ExcelFiles.