drernie
commented
1 year ago Ignore
Closed renovate[bot] closed 1 year ago
drernie
commented
1 year ago Ignore
renovate[bot]
commented
1 year ago Because you closed this PR without merging, Renovate will ignore this update (23.09.2-edge). You will get a PR once a newer version is released. To ignore this dependency forever, add it to the ignoreDeps array of your Renovate config.
If you accidentally closed this PR, or if you changed your mind: rename this PR to get a fresh replacement PR.
This PR contains the following updates:
23.04.3->23.09.2-edge23.04.3->23.09.2-edgeRelease Notes
nextflow-io/nextflow (io.nextflow:nf-commons)
### [`v23.09.2-edge`](https://togithub.com/nextflow-io/nextflow/releases/tag/v23.09.2-edge): Version 23.09.2-edge - Add `conda.enabled` to conda config scope docs ([#4320](https://togithub.com/nextflow-io/nextflow/issues/4320)) \[[`0b74c4e`](https://togithub.com/nextflow-io/nextflow/commit/0b74c4e2)] - Add developer docs ([#4065](https://togithub.com/nextflow-io/nextflow/issues/4065)) \[[`06843d8`](https://togithub.com/nextflow-io/nextflow/commit/06843d87)] - Add fs stat command \[[`a79056b`](https://togithub.com/nextflow-io/nextflow/commit/a79056b7)] - Add more tests to container name \[[`da7a194`](https://togithub.com/nextflow-io/nextflow/commit/da7a1942)] - Add `procps` by default to Conda-based Wave builds \[[`66b2d2d`](https://togithub.com/nextflow-io/nextflow/commit/66b2d2d2)] - Add support for Java 21 ([#4338](https://togithub.com/nextflow-io/nextflow/issues/4338)) \[[`ac1fc9e`](https://togithub.com/nextflow-io/nextflow/commit/ac1fc9ee)] - Add Mermaid diagram in HTML DAG ([#4337](https://togithub.com/nextflow-io/nextflow/issues/4337)) \[[`0f3e263`](https://togithub.com/nextflow-io/nextflow/commit/0f3e263f)] - Default Conda `basePackages` to "conda-forge::procps-ng" \[[`367af52`](https://togithub.com/nextflow-io/nextflow/commit/367af52f)] - Disable Tower container field for multiple images \[[`b53936b`](https://togithub.com/nextflow-io/nextflow/commit/b53936b0)] - Document `NXF_DISABLE_CHECK_LATEST` environment var ([#4327](https://togithub.com/nextflow-io/nextflow/issues/4327)) \[[`4e3e9ac`](https://togithub.com/nextflow-io/nextflow/commit/4e3e9aca)] - Document `fs` CLI command ([#4328](https://togithub.com/nextflow-io/nextflow/issues/4328)) \[[`1a68049`](https://togithub.com/nextflow-io/nextflow/commit/1a680495)] - Document source of `vol_ctxt` and `inv_ctxt` trace metrics ([#4333](https://togithub.com/nextflow-io/nextflow/issues/4333)) \[[`6525b0a`](https://togithub.com/nextflow-io/nextflow/commit/6525b0a1)] - Document when process directives are evaluated ([#4217](https://togithub.com/nextflow-io/nextflow/issues/4217)) \[[`731a29a`](https://togithub.com/nextflow-io/nextflow/commit/731a29a2)] - Fix List of S3 bucket for custom endpoint \[[`4327fa5`](https://togithub.com/nextflow-io/nextflow/commit/4327fa58)] - Fix Prevent false positive resumable task \[[`144e0a8`](https://togithub.com/nextflow-io/nextflow/commit/144e0a8a)] - Fix Prevent multi attempts to retrieve AWS creds \[[`b30efe3`](https://togithub.com/nextflow-io/nextflow/commit/b30efe36)] - Fix allow_other vulnerability preventing google-batch submissions ([#4332](https://togithub.com/nextflow-io/nextflow/issues/4332)) \[[`9b3741e`](https://togithub.com/nextflow-io/nextflow/commit/9b3741e3)] - Fix fs list command \[[`29ab2f2`](https://togithub.com/nextflow-io/nextflow/commit/29ab2f24)] - Fix minor typos in changelogs/source code ([#4319](https://togithub.com/nextflow-io/nextflow/issues/4319)) \[[`4ce9f1d`](https://togithub.com/nextflow-io/nextflow/commit/4ce9f1df)] - Fix support for S3 custom endpoint with anonymous access \[[`0375281`](https://togithub.com/nextflow-io/nextflow/commit/03752815)] - Fix use of GITHUB_TOKEN variable to access GitHub repo \[[`afe3dc4`](https://togithub.com/nextflow-io/nextflow/commit/afe3dc4f)] - Fix Wave does not support 'null' container engine \[[`f3eba3d`](https://togithub.com/nextflow-io/nextflow/commit/f3eba3d7)] - Fix Retry TimeoutException in Azure file system ([#4295](https://togithub.com/nextflow-io/nextflow/issues/4295)) \[[`7924835`](https://togithub.com/nextflow-io/nextflow/commit/79248355)] - Improve K8s unit tests ([#4196](https://togithub.com/nextflow-io/nextflow/issues/4196)) \[[`5a43a32`](https://togithub.com/nextflow-io/nextflow/commit/5a43a32b)] - Improve Mermaid DAG rendering ([#4070](https://togithub.com/nextflow-io/nextflow/issues/4070)) \[[`19587f4`](https://togithub.com/nextflow-io/nextflow/commit/19587f40)] - Improve error report when exception is thrown in operator ctx \[[`16f54a9`](https://togithub.com/nextflow-io/nextflow/commit/16f54a9c)] - Improve wave container name validation \[[`73eb5a0`](https://togithub.com/nextflow-io/nextflow/commit/73eb5a02)] - Minor improvements \[[`fff3d7b`](https://togithub.com/nextflow-io/nextflow/commit/fff3d7bd)] - Prevent cache invalidation for task directives ([#4339](https://togithub.com/nextflow-io/nextflow/issues/4339)) \[[`aabb6c1`](https://togithub.com/nextflow-io/nextflow/commit/aabb6c19)] - Remove line endings from container box id ([#4334](https://togithub.com/nextflow-io/nextflow/issues/4334)) \[[`df41e54`](https://togithub.com/nextflow-io/nextflow/commit/df41e54a)] - Bump Apache 2.0 license to tower client \[[`e4a878b`](https://togithub.com/nextflow-io/nextflow/commit/e4a878b6)] - Bump nf-amazon@2.1.3 \[[`3311172`](https://togithub.com/nextflow-io/nextflow/commit/3311172f)] - Bump nf-azure@1.3.2 \[[`a9b735c`](https://togithub.com/nextflow-io/nextflow/commit/a9b735ce)] - Bump nf-google@1.8.2 \[[`7219d7f`](https://togithub.com/nextflow-io/nextflow/commit/7219d7f2)] - Bump nf-tower@1.6.2 \[[`91a935f`](https://togithub.com/nextflow-io/nextflow/commit/91a935f9)] - Bump nf-wave@0.13.0 \[[`0cf2476`](https://togithub.com/nextflow-io/nextflow/commit/0cf2476c)] - Bump wave-utils@0.7.8 \[[`d0c47d4`](https://togithub.com/nextflow-io/nextflow/commit/d0c47d49)] ### [`v23.09.1-edge`](https://togithub.com/nextflow-io/nextflow/releases/tag/v23.09.1-edge): Version 23.09.1-edge - Revert "Allow setting shell directive when using the trace file ([#4210](https://togithub.com/nextflow-io/nextflow/issues/4210))" \[[`9f9edcd`](https://togithub.com/nextflow-io/nextflow/commit/9f9edcdc)] ### [`v23.09.0-edge`](https://togithub.com/nextflow-io/nextflow/releases/tag/v23.09.0-edge): Version 23.09.0-edge - Add check for latest version ([#4194](https://togithub.com/nextflow-io/nextflow/issues/4194)) \[[`3e8cd48`](https://togithub.com/nextflow-io/nextflow/commit/3e8cd488)] - Add inspect command ([#4069](https://togithub.com/nextflow-io/nextflow/issues/4069)) \[[`090c31c`](https://togithub.com/nextflow-io/nextflow/commit/090c31ce)] - Add maxSubmitAwait ([#3736](https://togithub.com/nextflow-io/nextflow/issues/3736)) \[[`5686bf1`](https://togithub.com/nextflow-io/nextflow/commit/5686bf1d)] - Add scripts logging for troubleshooting \[[`c056a74`](https://togithub.com/nextflow-io/nextflow/commit/c056a74e)] - Add support for Spack to Singularity builds \[[`23c4ec1`](https://togithub.com/nextflow-io/nextflow/commit/23c4ec1d)] - Add support for Wave native build for Singularity \[[`8a43489`](https://togithub.com/nextflow-io/nextflow/commit/8a434893)] - Add support for inputs and outputs arity \[[`42504d3`](https://togithub.com/nextflow-io/nextflow/commit/42504d3c)] - Add support for remote debug ([#4266](https://togithub.com/nextflow-io/nextflow/issues/4266)) \[[`87e0648`](https://togithub.com/nextflow-io/nextflow/commit/87e0648a)] - Add warning about using clusterOptions with process directives ([#4248](https://togithub.com/nextflow-io/nextflow/issues/4248)) \[[`a68c1a3`](https://togithub.com/nextflow-io/nextflow/commit/a68c1a3e)] - Add which to dockerfile build \[[`817aa05`](https://togithub.com/nextflow-io/nextflow/commit/817aa05b)] - Align Singularity experience with Docker ([#4230](https://togithub.com/nextflow-io/nextflow/issues/4230)) \[[`a1e1d3c`](https://togithub.com/nextflow-io/nextflow/commit/a1e1d3ca)] \[[`c1cc60d`](https://togithub.com/nextflow-io/nextflow/commit/c1cc60dd)] - Allow setting shell directive when using the trace file ([#4210](https://togithub.com/nextflow-io/nextflow/issues/4210)) \[[`7d6ad62`](https://togithub.com/nextflow-io/nextflow/commit/7d6ad624)] - Always emit publish event for cached task outputs ([#4227](https://togithub.com/nextflow-io/nextflow/issues/4227)) \[[`62686ce`](https://togithub.com/nextflow-io/nextflow/commit/62686ce8)] - Deprecated Wave report feature \[[`80c5cb2`](https://togithub.com/nextflow-io/nextflow/commit/80c5cb27)] - Disable staging script for remote work dir ([#4282](https://togithub.com/nextflow-io/nextflow/issues/4282)) \[[`80f7cd4`](https://togithub.com/nextflow-io/nextflow/commit/80f7cd46)] - Disable version check on CI tests \[[`db79e13`](https://togithub.com/nextflow-io/nextflow/commit/db79e13f)] - Docs improvement to clarify the usage of the bin dir ([#4121](https://togithub.com/nextflow-io/nextflow/issues/4121)) \[[`2daa417`](https://togithub.com/nextflow-io/nextflow/commit/2daa4172)] - Document API differences of process path inputs ([#4189](https://togithub.com/nextflow-io/nextflow/issues/4189)) \[[`c37e00b`](https://togithub.com/nextflow-io/nextflow/commit/c37e00bc)] - Document use of local variables in closures ([#4251](https://togithub.com/nextflow-io/nextflow/issues/4251)) \[[`05ff784`](https://togithub.com/nextflow-io/nextflow/commit/05ff784a)] - Fix IOException should be thrown when failing to creare Azure directory \[[`b0bdfd7`](https://togithub.com/nextflow-io/nextflow/commit/b0bdfd79)] - Fix Parallel execution of Conda corrupts data and packages ([#4253](https://togithub.com/nextflow-io/nextflow/issues/4253)) \[[`976c282`](https://togithub.com/nextflow-io/nextflow/commit/976c282c)] - Fix Parse negative CLI params as numbers ([#4238](https://togithub.com/nextflow-io/nextflow/issues/4238)) \[[`1ae70d5`](https://togithub.com/nextflow-io/nextflow/commit/1ae70d5d)] - Fix Too long Http connection pool timeout \[[`fa961e7`](https://togithub.com/nextflow-io/nextflow/commit/fa961e7f)] - Fix Wave build for Singularity files \[[`a60ef72`](https://togithub.com/nextflow-io/nextflow/commit/a60ef72b)] - Fix Wave build when Conda package name is quoted \[[`d19cb0b`](https://togithub.com/nextflow-io/nextflow/commit/d19cb0b7)] - Fix failing test \[[`2785ffe`](https://togithub.com/nextflow-io/nextflow/commit/2785ffe9)] - Fix fs cp command with remote file \[[`366eede`](https://togithub.com/nextflow-io/nextflow/commit/366eedec)] - Fix printf command with negative exit code ([#4213](https://togithub.com/nextflow-io/nextflow/issues/4213)) \[[`465468b`](https://togithub.com/nextflow-io/nextflow/commit/465468b0)] - Fix security deps in nf-azure plugin \[[`c30d521`](https://togithub.com/nextflow-io/nextflow/commit/c30d5211)] - Fix setting `executor.queueSize = 0` is ignored ([#4228](https://togithub.com/nextflow-io/nextflow/issues/4228)) \[[`6664b57`](https://togithub.com/nextflow-io/nextflow/commit/6664b578)] - Improve Wave handing of Conda envs \[[`736ab9b`](https://togithub.com/nextflow-io/nextflow/commit/736ab9bb)] - Improve pod options documentation ([#4274](https://togithub.com/nextflow-io/nextflow/issues/4274)) \[[`c3aa26e`](https://togithub.com/nextflow-io/nextflow/commit/c3aa26e1)] - Make TraceRecord@store field public accessible \[[`07582f0`](https://togithub.com/nextflow-io/nextflow/commit/07582f0b)] - Remove -dsl1 and -dsl1 rub cli options \[[`b6721b7`](https://togithub.com/nextflow-io/nextflow/commit/b6721b71)] - Remove experimental -dockerize option /2 \[[`7def554`](https://togithub.com/nextflow-io/nextflow/commit/7def5542)] - Remove experimental -dockerize option \[[`937c8fb`](https://togithub.com/nextflow-io/nextflow/commit/937c8fb7)] - Report an error on duplicate workflow name definitions ([#4088](https://togithub.com/nextflow-io/nextflow/issues/4088)) \[[`fce9702`](https://togithub.com/nextflow-io/nextflow/commit/fce9702e)] - Undocument internal NXF_DEBUG variable \[[`7955db8`](https://togithub.com/nextflow-io/nextflow/commit/7955db8d)] - Update AZ File share doc ([#4235](https://togithub.com/nextflow-io/nextflow/issues/4235)) \[[`69d317b`](https://togithub.com/nextflow-io/nextflow/commit/69d317b6)] - Update docs about splitCsv() operator ([#4163](https://togithub.com/nextflow-io/nextflow/issues/4163)) \[[`1dfb621`](https://togithub.com/nextflow-io/nextflow/commit/1dfb621c)] - Update documentation of NXF_DEBUG ([#4187](https://togithub.com/nextflow-io/nextflow/issues/4187)) \[[`a88a424`](https://togithub.com/nextflow-io/nextflow/commit/a88a4245)] - Use sipHash24 in place of deprecated murmur32 for script aliasing \[[`bb96763`](https://togithub.com/nextflow-io/nextflow/commit/bb96763f)] - Bump groovy 3.0.19 \[[`cb41120`](https://togithub.com/nextflow-io/nextflow/commit/cb411208)] - Bump nf-amazon@2.1.2 \[[`7e5d414`](https://togithub.com/nextflow-io/nextflow/commit/7e5d414e)] - Bump nf-azure@1.3.1 \[[`83410f3`](https://togithub.com/nextflow-io/nextflow/commit/83410f39)] - Bump nf-wave@0.12.0 \[[`a9f6dd6`](https://togithub.com/nextflow-io/nextflow/commit/a9f6dd65)] ### [`v23.08.1-edge`](https://togithub.com/nextflow-io/nextflow/releases/tag/v23.08.1-edge): Version 23.08.1-edge - Add 429 http status code to Wave retriable errors \[[`8eb5f30`](https://togithub.com/nextflow-io/nextflow/commit/8eb5f305)] - Add resource labels support for Azure Batch ([#4178](https://togithub.com/nextflow-io/nextflow/issues/4178)) \[[`7b5e50a`](https://togithub.com/nextflow-io/nextflow/commit/7b5e50a1)] - Apply K8s Pod metadata to Job ([#4057](https://togithub.com/nextflow-io/nextflow/issues/4057)) \[[`4d91862`](https://togithub.com/nextflow-io/nextflow/commit/4d918627)] - Document error about trailing backslash with space ([#4180](https://togithub.com/nextflow-io/nextflow/issues/4180)) \[[`245afa5`](https://togithub.com/nextflow-io/nextflow/commit/245afa5d)] - Enable cloud cache based on environment variable ([#4160](https://togithub.com/nextflow-io/nextflow/issues/4160)) \[[`a66b0e6`](https://togithub.com/nextflow-io/nextflow/commit/a66b0e63)] - Escape semicolons in paths ([#4193](https://togithub.com/nextflow-io/nextflow/issues/4193)) \[[`552501c`](https://togithub.com/nextflow-io/nextflow/commit/552501ce)] - FIx nested InvocationTargetException ([#4192](https://togithub.com/nextflow-io/nextflow/issues/4192)) \[[`67980f1`](https://togithub.com/nextflow-io/nextflow/commit/67980f19)] - Fix Execution should fail if report or timeline file already exists \[[`b238d7e`](https://togithub.com/nextflow-io/nextflow/commit/b238d7e2)] - Fix Process hangs when using flatten and finish errorStrategy \[[`d99b343`](https://togithub.com/nextflow-io/nextflow/commit/d99b3432)] - Fix `workflow.container` map resolution ([#4190](https://togithub.com/nextflow-io/nextflow/issues/4190)) \[[`96ab8a6`](https://togithub.com/nextflow-io/nextflow/commit/96ab8a69)] - Fix checkpoint thread termination ([#4166](https://togithub.com/nextflow-io/nextflow/issues/4166)) \[[`2b449da`](https://togithub.com/nextflow-io/nextflow/commit/2b449daa)] - Fix env output when changing task workdir \[[`8e4d7fe`](https://togithub.com/nextflow-io/nextflow/commit/8e4d7fed)] - Fix if-guard on log.trace in trask processor inner class \[[`50f6f6d`](https://togithub.com/nextflow-io/nextflow/commit/50f6f6d5)] - Fix typos in source code comments ([#4173](https://togithub.com/nextflow-io/nextflow/issues/4173)) \[[`e78bc37`](https://togithub.com/nextflow-io/nextflow/commit/e78bc37e)] - Improve Conda build error report \[[`7b19fb0`](https://togithub.com/nextflow-io/nextflow/commit/7b19fb03)] - Improve handling of name-only container env variables \[[`3051cd1`](https://togithub.com/nextflow-io/nextflow/commit/3051cd13)] - Minor changes \[[`7e58c94`](https://togithub.com/nextflow-io/nextflow/commit/7e58c945)] - Remove dockerize launcher classpath file ([#4191](https://togithub.com/nextflow-io/nextflow/issues/4191)) \[[`2bae519`](https://togithub.com/nextflow-io/nextflow/commit/2bae5198)] - Remove lock file from cloudcache ([#4167](https://togithub.com/nextflow-io/nextflow/issues/4167)) \[[`6e6ea57`](https://togithub.com/nextflow-io/nextflow/commit/6e6ea579)] - Update AWS instructions for creating a custom AMI ([#4174](https://togithub.com/nextflow-io/nextflow/issues/4174)) \[[`563bff1`](https://togithub.com/nextflow-io/nextflow/commit/563bff13)] - Update changelog \[[`98f88a5`](https://togithub.com/nextflow-io/nextflow/commit/98f88a50)] - Update tip about modifying maps ([#4153](https://togithub.com/nextflow-io/nextflow/issues/4153)) \[[`30036db`](https://togithub.com/nextflow-io/nextflow/commit/30036dbf)] - Use root user in Wave container based on micromamba ([#4038](https://togithub.com/nextflow-io/nextflow/issues/4038)) \[[`a3a75ea`](https://togithub.com/nextflow-io/nextflow/commit/a3a75ea2)] - Bump nf-azure@1.3.0 \[[`6670bb0`](https://togithub.com/nextflow-io/nextflow/commit/6670bb06)] - Bump nf-cloudcache@0.2.0 \[[`fb8f668`](https://togithub.com/nextflow-io/nextflow/commit/fb8f6681)] - Bump nf-tower@1.6.1 \[[`d06b836`](https://togithub.com/nextflow-io/nextflow/commit/d06b8365)] - Bump nf-wave@0.11.2 \[[`7555b17`](https://togithub.com/nextflow-io/nextflow/commit/7555b17d)] ### [`v23.08.0-edge`](https://togithub.com/nextflow-io/nextflow/releases/tag/v23.08.0-edge): Version 23.08.0-edge - Add `-value` option to `config` command ([#4142](https://togithub.com/nextflow-io/nextflow/issues/4142)) \[[`57e3100`](https://togithub.com/nextflow-io/nextflow/commit/57e3100b)] - Add `deleteTasksOnCompletion` to Azure Batch configuration ([#4114](https://togithub.com/nextflow-io/nextflow/issues/4114)) \[[`b14674d`](https://togithub.com/nextflow-io/nextflow/commit/b14674dc)] - Add Tower logs checkpoint ([#4132](https://togithub.com/nextflow-io/nextflow/issues/4132)) \[[`71dfecc`](https://togithub.com/nextflow-io/nextflow/commit/71dfecc2)] - Allow use virtual threads in Wave client \[[`dd32f80`](https://togithub.com/nextflow-io/nextflow/commit/dd32f80a)] - Allow workflow entry from module import ([#4128](https://togithub.com/nextflow-io/nextflow/issues/4128)) \[[`51f5c84`](https://togithub.com/nextflow-io/nextflow/commit/51f5c842)] - Disable cache backup/restore if cloudcache is used ([#4125](https://togithub.com/nextflow-io/nextflow/issues/4125)) \[[`46e828e`](https://togithub.com/nextflow-io/nextflow/commit/46e828e1)] - Document behavior of withName selector with included aliases ([#4129](https://togithub.com/nextflow-io/nextflow/issues/4129)) \[[`8b7e3d4`](https://togithub.com/nextflow-io/nextflow/commit/8b7e3d48)] - Fix Option fixOwnership traverse parent directories \[[`f2a2ea3`](https://togithub.com/nextflow-io/nextflow/commit/f2a2ea35)] - Fix Redirection http redirection across different hosts \[[`fcdeec0`](https://togithub.com/nextflow-io/nextflow/commit/fcdeec02)] - Fix Wave disable flag \[[`8579e7a`](https://togithub.com/nextflow-io/nextflow/commit/8579e7a4)] - Fix bug with K8s resource labels ([#4147](https://togithub.com/nextflow-io/nextflow/issues/4147)) eu-west-1\[[`3f4b855`](https://togithub.com/nextflow-io/nextflow/commit/3f4b8557)] - Fix glob resolution for remove files \[[`19a72c4`](https://togithub.com/nextflow-io/nextflow/commit/19a72c40)] - Fix incorrect error message on missing comma ([#4085](https://togithub.com/nextflow-io/nextflow/issues/4085)) eu-west-1\[[`a59af39`](https://togithub.com/nextflow-io/nextflow/commit/a59af39f)] - Fix missing changelog for version 23.07.0-edge eu-west-1\[[`9a33e93`](https://togithub.com/nextflow-io/nextflow/commit/9a33e936)] - Fix strict mode docs ([#4150](https://togithub.com/nextflow-io/nextflow/issues/4150)) \[[`6b46b50`](https://togithub.com/nextflow-io/nextflow/commit/6b46b507)] - Improve plugin docs ([#3957](https://togithub.com/nextflow-io/nextflow/issues/3957)) \[[`22638d4`](https://togithub.com/nextflow-io/nextflow/commit/22638d46)] - Improve Wave config logging \[[`547fad6`](https://togithub.com/nextflow-io/nextflow/commit/547fad62)] - Improve TaskPollingMonitor logging \[[`077ed5d`](https://togithub.com/nextflow-io/nextflow/commit/077ed5dd)] - Improve Wave and Fusion docs ([#4149](https://togithub.com/nextflow-io/nextflow/issues/4149)) \[[`d2229bd`](https://togithub.com/nextflow-io/nextflow/commit/d2229bde)] - Increase Wave client max attempts \[[`fe5dd49`](https://togithub.com/nextflow-io/nextflow/commit/fe5dd497)] - Remove module all components import \[[`a6d08c0`](https://togithub.com/nextflow-io/nextflow/commit/a6d08c04)] - Restore Tower CacheManager for backward compatibility \[[`6d26907`](https://togithub.com/nextflow-io/nextflow/commit/6d269070)] - Bump amazoncorretto:17.0.8 \[[`00eb145`](https://togithub.com/nextflow-io/nextflow/commit/00eb145c)] - Bump nf-wave@0.11.1 \[[`78e4b27`](https://togithub.com/nextflow-io/nextflow/commit/78e4b278)] - Bump nf-tower@1.6.0 \[[`41c8c16`](https://togithub.com/nextflow-io/nextflow/commit/41c8c164)] - Bump nf-azure@1.2.0 \[[`5f33ac1`](https://togithub.com/nextflow-io/nextflow/commit/5f33ac17)] - Bump nf-amazon@2.1.1 \[[`981315a`](https://togithub.com/nextflow-io/nextflow/commit/981315ad) ### [`v23.07.0-edge`](https://togithub.com/nextflow-io/nextflow/releases/tag/v23.07.0-edge): Version 23.07.0-edge 23.07.0-edge - 23 Jul 2023 - Add CPU model name to trace files and traceRecord ([#3946](https://togithub.com/nextflow-io/nextflow/issues/3946)) \[[`e0d91bf`](https://togithub.com/nextflow-io/nextflow/commit/e0d91bf7)] - Add ability to disable CLI params type detection \[[`9a1c584`](https://togithub.com/nextflow-io/nextflow/commit/9a1c584d)] - Add cloudcache plugin ([#4097](https://togithub.com/nextflow-io/nextflow/issues/4097)) \[[`ac90cc2`](https://togithub.com/nextflow-io/nextflow/commit/ac90cc26)] - Add missing header to Wave container await \[[`d39866e`](https://togithub.com/nextflow-io/nextflow/commit/d39866e6)] - Add remote bin support for TES in a workdir ([#3990](https://togithub.com/nextflow-io/nextflow/issues/3990)) \[[`8a22168`](https://togithub.com/nextflow-io/nextflow/commit/8a22168a)] - Add retry logic to wave image await \[[`9fc1d3b`](https://togithub.com/nextflow-io/nextflow/commit/9fc1d3bd)] - Add rule to build Nextflow docker image for ARM ([#4020](https://togithub.com/nextflow-io/nextflow/issues/4020)) \[[`705d55f`](https://togithub.com/nextflow-io/nextflow/commit/705d55f5)] - Add support for AWS SSO credentials provider ([#4045](https://togithub.com/nextflow-io/nextflow/issues/4045)) \[[`53e33cd`](https://togithub.com/nextflow-io/nextflow/commit/53e33cde)] - Add support for Wave container freeze \[[`9a5903e`](https://togithub.com/nextflow-io/nextflow/commit/9a5903e6)] - Add support legacy Wave retry \[[`73a1e7d`](https://togithub.com/nextflow-io/nextflow/commit/73a1e7d4)] - Allow SLURM executor option `--mem-per-cpu` ([#4023](https://togithub.com/nextflow-io/nextflow/issues/4023)) \[[`96c04e3`](https://togithub.com/nextflow-io/nextflow/commit/96c04e3b)] - Allow disabling the Wave requirement when Fusion is enabled \[[`9180d63`](https://togithub.com/nextflow-io/nextflow/commit/9180d633)] - Disable Singularity and Apptainer home mount by default ([#4056](https://togithub.com/nextflow-io/nextflow/issues/4056)) \[[`a0ee465`](https://togithub.com/nextflow-io/nextflow/commit/a0ee4657)] - Document `NXF_WRAPPER_STAGE_FILE_THRESHOLD` environment variable ([#4113](https://togithub.com/nextflow-io/nextflow/issues/4113)) \[ci skip] \[[`bda4756`](https://togithub.com/nextflow-io/nextflow/commit/bda47567)] - Fix AzFileSystem retry policy \[[`ba9b6d1`](https://togithub.com/nextflow-io/nextflow/commit/ba9b6d18)] \[[`c2f3cc9`](https://togithub.com/nextflow-io/nextflow/commit/c2f3cc96)] - Fix Improve error message for invalid Azure URI \[[`0f4d886`](https://togithub.com/nextflow-io/nextflow/commit/0f4d8867)] - Fix Treat HTTP headers as case insensitive ([#4116](https://togithub.com/nextflow-io/nextflow/issues/4116)) \[[`97fd335`](https://togithub.com/nextflow-io/nextflow/commit/97fd3358)] - Fix invalid detection of hierarchical namespace stub blobs as files ([#4046](https://togithub.com/nextflow-io/nextflow/issues/4046)) \[[`ce06c87`](https://togithub.com/nextflow-io/nextflow/commit/ce06c877)] - Fix stage script in Fusion script launcher ([#4109](https://togithub.com/nextflow-io/nextflow/issues/4109)) \[[`0933f47`](https://togithub.com/nextflow-io/nextflow/commit/0933f47e)] - Ignore accelerator type for AWS Batch ([#4043](https://togithub.com/nextflow-io/nextflow/issues/4043)) \[[`263ecca`](https://togithub.com/nextflow-io/nextflow/commit/263ecca8)] - Implement Weblog feature as an external plugin \[[`f9f2c33`](https://togithub.com/nextflow-io/nextflow/commit/f9f2c338)] - Improve "Unexpected input: '{'" error message ([#4122](https://togithub.com/nextflow-io/nextflow/issues/4122)) \[[`ef9d3cf`](https://togithub.com/nextflow-io/nextflow/commit/ef9d3cf0)] - Improve Azure retry logging \[[`de58697`](https://togithub.com/nextflow-io/nextflow/commit/de58697a)] - Improve description of channels and channel types ([#4120](https://togithub.com/nextflow-io/nextflow/issues/4120)) \[[`8975734`](https://togithub.com/nextflow-io/nextflow/commit/8975734d)] - Improve handling Wave server errors \[[`84f7a61`](https://togithub.com/nextflow-io/nextflow/commit/84f7a61a)] - Increase Azure min retry delay to 250ms \[[`2e77e5e`](https://togithub.com/nextflow-io/nextflow/commit/2e77e5e4)] - Remove default arch from wave request \[[`f0e5c0c`](https://togithub.com/nextflow-io/nextflow/commit/f0e5c0c1)] - Remove logging of report JSON data ([#4098](https://togithub.com/nextflow-io/nextflow/issues/4098)) \[[`099e503`](https://togithub.com/nextflow-io/nextflow/commit/099e5039)] - Wait for all child processes in nxf_parallel ([#4050](https://togithub.com/nextflow-io/nextflow/issues/4050)) \[[`60a5f1a`](https://togithub.com/nextflow-io/nextflow/commit/60a5f1a7)] - Bump Groovy 3.0.18 \[[`207eb53`](https://togithub.com/nextflow-io/nextflow/commit/207eb535)] - Bump micromamba 1.4.9 \[[`6307f9b`](https://togithub.com/nextflow-io/nextflow/commit/6307f9b5)] - Bump nf-amazon@2.1.0 \[[`5746474`](https://togithub.com/nextflow-io/nextflow/commit/57464746)] - Bump nf-azure@1.1.2 \[[`e1512f6`](https://togithub.com/nextflow-io/nextflow/commit/e1512f6a)] - Bump nf-azure@1.1.3 \[[`27e7f66`](https://togithub.com/nextflow-io/nextflow/commit/27e7f663)] - Bump nf-azure@1.1.4 \[[`1895efc`](https://togithub.com/nextflow-io/nextflow/commit/1895efc4)] - Bump nf-cloudcache@0.1.0 \[[`cb6242c`](https://togithub.com/nextflow-io/nextflow/commit/cb6242c4)] - Bump nf-ga4gh@1.1.0 \[[`f98feb7`](https://togithub.com/nextflow-io/nextflow/commit/f98feb77)] - Bump nf-google@1.8.1 \[[`6aede7c`](https://togithub.com/nextflow-io/nextflow/commit/6aede7c0)] - Bump nf-tower@1.5.15 \[[`3278d79`](https://togithub.com/nextflow-io/nextflow/commit/3278d798)] - Bump nf-wave@0.11.0 \[[`2998db5`](https://togithub.com/nextflow-io/nextflow/commit/2998db5d)] ### [`v23.06.0-edge`](https://togithub.com/nextflow-io/nextflow/releases/tag/v23.06.0-edge): Version 23.06.0-edge - Add Wave containers reports (preview) \[[`9d9e275`](https://togithub.com/nextflow-io/nextflow/commit/9d9e2758)] - Add disk resource with type option for Google batch ([#3861](https://togithub.com/nextflow-io/nextflow/issues/3861)) \[[`166b363`](https://togithub.com/nextflow-io/nextflow/commit/166b3638)] - Add httpConnectTimeout and httpReadTimeout to Google options ([#3974](https://togithub.com/nextflow-io/nextflow/issues/3974)) \[[`49fa15f`](https://togithub.com/nextflow-io/nextflow/commit/49fa15f7)] - Add plugin cmd help description \[[`d3788f9`](https://togithub.com/nextflow-io/nextflow/commit/d3788f9f)] - Add retry policy on Az blob operations \[[`295bc1f`](https://togithub.com/nextflow-io/nextflow/commit/295bc1ff)] - Add retry policy to Wave HTTP client \[[`1daebee`](https://togithub.com/nextflow-io/nextflow/commit/1daebeef)] - Add support for AWS SES as mail sending provider \[[`df85d44`](https://togithub.com/nextflow-io/nextflow/commit/df85d443)] - Add support for arch auto-detection to Wave \[[`7b5fdaf`](https://togithub.com/nextflow-io/nextflow/commit/7b5fdaf0)] - Add `wave.httpClient.connectTimeout` config option \[[`dd999a3`](https://togithub.com/nextflow-io/nextflow/commit/dd999a3c)] - Clarify tip about groupTuple size and groupKey ([#3949](https://togithub.com/nextflow-io/nextflow/issues/3949)) \[[`e60d327`](https://togithub.com/nextflow-io/nextflow/commit/e60d327f)] - Consolidate Wave `retryPolicy` options \[[`7d7464f`](https://togithub.com/nextflow-io/nextflow/commit/7d7464fe)] - Enhanced support for Spack + Wave ([#3998](https://togithub.com/nextflow-io/nextflow/issues/3998)) \[[`63ac03b`](https://togithub.com/nextflow-io/nextflow/commit/63ac03b3)] - Fix Google Batch default instance family types ([#3960](https://togithub.com/nextflow-io/nextflow/issues/3960)) \[[`b5257cd`](https://togithub.com/nextflow-io/nextflow/commit/b5257cd7)] - Fix S3 path normalization \[[`b75ec44`](https://togithub.com/nextflow-io/nextflow/commit/b75ec444)] - Fix access to public S3 bucket when no creds are provided ([#3992](https://togithub.com/nextflow-io/nextflow/issues/3992)) \[[`cf8ba46`](https://togithub.com/nextflow-io/nextflow/commit/cf8ba466)] \[[`680f0a9`](https://togithub.com/nextflow-io/nextflow/commit/680f0a90)] - Fix `containerOptions` when using Fusion \[[`dcde7b7`](https://togithub.com/nextflow-io/nextflow/commit/dcde7b7f)] - Fix dump pretty print not to modify input ([#3955](https://togithub.com/nextflow-io/nextflow/issues/3955)) \[[`46c17ee`](https://togithub.com/nextflow-io/nextflow/commit/46c17ee3)] - Fix invalid machine type setting when no valid machine type is found ([#3961](https://togithub.com/nextflow-io/nextflow/issues/3961)) \[[`5eb9397`](https://togithub.com/nextflow-io/nextflow/commit/5eb93971)] - Fix matching symlink files \[[`d63af78`](https://togithub.com/nextflow-io/nextflow/commit/d63af784)] - Fix missing options for JsonSplitter creation ([#3958](https://togithub.com/nextflow-io/nextflow/issues/3958)) \[[`f991fe9`](https://togithub.com/nextflow-io/nextflow/commit/f991fe9e)] - Fix non-deterministic null container engine error \[[`f227f2e`](https://togithub.com/nextflow-io/nextflow/commit/f227f2e5)] - Fix packing all, including Wave \[[`735b8d9`](https://togithub.com/nextflow-io/nextflow/commit/735b8d9c)] - Fix static compiler errors \[[`f48a473`](https://togithub.com/nextflow-io/nextflow/commit/f48a473c)] - Improve documentation on Nextflow scripts ([#3953](https://togithub.com/nextflow-io/nextflow/issues/3953)) \[[`80050c0`](https://togithub.com/nextflow-io/nextflow/commit/80050c03)] - Minor change in Wave config \[[`4da0442`](https://togithub.com/nextflow-io/nextflow/commit/4da0442a)] - Prevent null exit code when Google batch is unable to access exit status \[[`f68a39e`](https://togithub.com/nextflow-io/nextflow/commit/f68a39ec)] - Refactor Conda and Spack support for Wave to Java \[[`36b9e22`](https://togithub.com/nextflow-io/nextflow/commit/36b9e226)] - Remove `--no-home` default option from charliecloud builder ([#3956](https://togithub.com/nextflow-io/nextflow/issues/3956)) \[[`915074a`](https://togithub.com/nextflow-io/nextflow/commit/915074a4)] - Update `workflow.revision` max length to match the one in Tower ([#4010](https://togithub.com/nextflow-io/nextflow/issues/4010)) \[[`1433a90`](https://togithub.com/nextflow-io/nextflow/commit/1433a903)] - Bump amazocorretto:17.0.7 \[[`c8aa121`](https://togithub.com/nextflow-io/nextflow/commit/c8aa1214)] - Bump azure-storage-blob:12.22.1 \[[`2a36fa7`](https://togithub.com/nextflow-io/nextflow/commit/2a36fa77)] - Bump nf-wave@0.10.0 \[[`0872fba`](https://togithub.com/nextflow-io/nextflow/commit/0872fba5)] - Bump nf-tower@1.5.14 \[[`64bf311`](https://togithub.com/nextflow-io/nextflow/commit/64bf3115)] - Bump nf-google@1.8.0 \[[`7ca7d80`](https://togithub.com/nextflow-io/nextflow/commit/7ca7d808)] - Bump nf-azure@1.1.1 \[[`afd368c`](https://togithub.com/nextflow-io/nextflow/commit/afd368c4)] - Bump nf-amazon@2.0.1 \[[`58c332a`](https://togithub.com/nextflow-io/nextflow/commit/58c332a1)] ### [`v23.05.0-edge`](https://togithub.com/nextflow-io/nextflow/releases/tag/v23.05.0-edge): Version 23.05.0-edge 23.05.0-edge - 15 May 2023 - Add support for custom custom root directory to resolve relative paths ([#3942](https://togithub.com/nextflow-io/nextflow/issues/3942)) \[[`f06bb1f`](https://togithub.com/nextflow-io/nextflow/commit/f06bb1f7)] - Add `arch` directive support for Spack ([#3786](https://togithub.com/nextflow-io/nextflow/issues/3786)) \[[`62dfc48`](https://togithub.com/nextflow-io/nextflow/commit/62dfc482)] - Add clone deep option to run and pull commands \[[`b44b645`](https://togithub.com/nextflow-io/nextflow/commit/b44b6453)] - Add fusion.exportStorageCredentials option \[[`acb6aed`](https://togithub.com/nextflow-io/nextflow/commit/acb6aedf)] - Add groovy-yaml to core runtime \[[`003e1f7`](https://togithub.com/nextflow-io/nextflow/commit/003e1f70)] - Add missing test env variables to CI build \[[`a0e501b`](https://togithub.com/nextflow-io/nextflow/commit/a0e501bf)] - Add splitJson Operator ([#3830](https://togithub.com/nextflow-io/nextflow/issues/3830)) \[[`4f58f69`](https://togithub.com/nextflow-io/nextflow/commit/4f58f695)] - Add support for Java 20 \[[`3788a68`](https://togithub.com/nextflow-io/nextflow/commit/3788a689)] - Add support for `time` directive in Azure Batch ([#3869](https://togithub.com/nextflow-io/nextflow/issues/3869)) \[[`5c11a0d`](https://togithub.com/nextflow-io/nextflow/commit/5c11a0d4)] - Add support for the Spack recipes to Wave build ([#3636](https://togithub.com/nextflow-io/nextflow/issues/3636)) \[[`b03cbe7`](https://togithub.com/nextflow-io/nextflow/commit/b03cbe70)] - Add Preview support for virtual threads ([#3871](https://togithub.com/nextflow-io/nextflow/issues/3871)) \[[`5c42904`](https://togithub.com/nextflow-io/nextflow/commit/5c429046)] - Convert docs to Markdown ([#3196](https://togithub.com/nextflow-io/nextflow/issues/3196)) \[[`3cad402`](https://togithub.com/nextflow-io/nextflow/commit/3cad402f)] - Deprecate DSL1 syntax for tap operator ([#3004](https://togithub.com/nextflow-io/nextflow/issues/3004)) \[[`2be0edf`](https://togithub.com/nextflow-io/nextflow/commit/2be0edfe)] - Enable static compilation to missing classes ([#3906](https://togithub.com/nextflow-io/nextflow/issues/3906)) \[[`c3c4b2f`](https://togithub.com/nextflow-io/nextflow/commit/c3c4b2f0)] - Fix -with-conda option in the docs ([#3867](https://togithub.com/nextflow-io/nextflow/issues/3867)) \[[`9b350ba`](https://togithub.com/nextflow-io/nextflow/commit/9b350ba8)] - Fix AWS SSE env propagation to Fusion \[[`e24608c`](https://togithub.com/nextflow-io/nextflow/commit/e24608c3)] - Fix Apptainer rendering by removing superflous space \[[`36607ed`](https://togithub.com/nextflow-io/nextflow/commit/36607ed1)] - Fix Azure jobs correctly deleted after completion ([#3927](https://togithub.com/nextflow-io/nextflow/issues/3927)) \[[`b173a98`](https://togithub.com/nextflow-io/nextflow/commit/b173a983)] - Fix Azure pool creation when using scaling formula ([#3868](https://togithub.com/nextflow-io/nextflow/issues/3868)) \[[`79984a8`](https://togithub.com/nextflow-io/nextflow/commit/79984a87)] - Fix DSL2 support in nextflow console ([#3864](https://togithub.com/nextflow-io/nextflow/issues/3864)) \[[`0253f8d`](https://togithub.com/nextflow-io/nextflow/commit/0253f8d7)] - Fix K8s handling PodUnschedulableException ([#3938](https://togithub.com/nextflow-io/nextflow/issues/3938)) \[[`5b756c6`](https://togithub.com/nextflow-io/nextflow/commit/5b756c63)] - Fix `interval` channel factory ([#3848](https://togithub.com/nextflow-io/nextflow/issues/3848)) \[[`d001e4c`](https://togithub.com/nextflow-io/nextflow/commit/d001e4c7)] - Fix invalid warning on func import ([#3807](https://togithub.com/nextflow-io/nextflow/issues/3807)) \[[`bb83696`](https://togithub.com/nextflow-io/nextflow/commit/bb836960)] - Fix minor typo in nextflow subcommand ([#3853](https://togithub.com/nextflow-io/nextflow/issues/3853)) \[[`dd3be3d`](https://togithub.com/nextflow-io/nextflow/commit/dd3be3d1)] - Fix misleading error message on NoSuchFileException \[[`f3dceba`](https://togithub.com/nextflow-io/nextflow/commit/f3dceba6)] - Fix missing SAS token fusion env for Azure \[[`4301502`](https://togithub.com/nextflow-io/nextflow/commit/43015029)] - Fix problem args were not correctly represented in debug yaml ([#3904](https://togithub.com/nextflow-io/nextflow/issues/3904)) \[[`eeb4b5c`](https://togithub.com/nextflow-io/nextflow/commit/eeb4b5c8)] - Fix string comparison in S3 client ([#3875](https://togithub.com/nextflow-io/nextflow/issues/3875)) \[[`9344d29`](https://togithub.com/nextflow-io/nextflow/commit/9344d294)] - Fix use of remote dir with local exec statement \[[`850bc3d`](https://togithub.com/nextflow-io/nextflow/commit/850bc3d9)] - Fix Quote Singularity/Apptainer env values \[[`586417a`](https://togithub.com/nextflow-io/nextflow/commit/586417ac)] - Improve handling default out param \[[`9147197`](https://togithub.com/nextflow-io/nextflow/commit/91471970)] - Improve plugin test detection \[[`29794bf`](https://togithub.com/nextflow-io/nextflow/commit/29794bf4)] - Improve plugin updater err handling \[[`f3d72f2`](https://togithub.com/nextflow-io/nextflow/commit/f3d72f22)] - Improve task out redirect remove the use of mkfifo ([#3863](https://togithub.com/nextflow-io/nextflow/issues/3863)) \[[`efedec7`](https://togithub.com/nextflow-io/nextflow/commit/efedec74)] - Improve Use Docker stop instead of docker kill \[[`32e6fd8`](https://togithub.com/nextflow-io/nextflow/commit/32e6fd85)] - Improve Use separate script for long stage/unstage commands ([#3851](https://togithub.com/nextflow-io/nextflow/issues/3851)) \[[`4343e33`](https://togithub.com/nextflow-io/nextflow/commit/4343e333)] - Increase Azure default maxRetries to 10 \[[`a017139`](https://togithub.com/nextflow-io/nextflow/commit/a017139f)] - Keep plugins-info content sorted \[[`d5552ee`](https://togithub.com/nextflow-io/nextflow/commit/d5552ee6)] - Minor change on Docker-spack templates \[[`e0e24bd`](https://togithub.com/nextflow-io/nextflow/commit/e0e24bda)] - Refactor the AWS configuration ([#3498](https://togithub.com/nextflow-io/nextflow/issues/3498)) \[[`a74e42d`](https://togithub.com/nextflow-io/nextflow/commit/a74e42d9)] - Remove `Channel.from` in favor of `Channel.of` from tests and docs ([#3670](https://togithub.com/nextflow-io/nextflow/issues/3670)) \[[`aa8b72f`](https://togithub.com/nextflow-io/nextflow/commit/aa8b72fa)] - Rename AmazonS3Client to S3Client \[[`cc59596`](https://togithub.com/nextflow-io/nextflow/commit/cc59596a)] - Rename com.upplication.s3fs package to nextflow.cloud.aws.nio \[[`a2f3bb2`](https://togithub.com/nextflow-io/nextflow/commit/a2f3bb24)] - Run build CI tests on push to branches starting with `test*` or `dev*` ([#3852](https://togithub.com/nextflow-io/nextflow/issues/3852)) \[[`7032e17`](https://togithub.com/nextflow-io/nextflow/commit/7032e17c)] - Security fixes \[[`973b7be`](https://togithub.com/nextflow-io/nextflow/commit/973b7bea)] - Support enums in cache helper ([#3901](https://togithub.com/nextflow-io/nextflow/issues/3901)) \[[`e4b977a`](https://togithub.com/nextflow-io/nextflow/commit/e4b977a4)] - Bump slf4j 2.0.7 and logback 1.4.6 \[[`d7eae86`](https://togithub.com/nextflow-io/nextflow/commit/d7eae86e)] - Bump JGit 6.5 and use depth 1 when cloning repos \[[`eda0845`](https://togithub.com/nextflow-io/nextflow/commit/eda0845c)] - Bump aws-java-sdk-s3:1.12.429 \[[`465171f`](https://togithub.com/nextflow-io/nextflow/commit/465171f5)] - Bump fusion 2.2 \[[`f1ebe29`](https://togithub.com/nextflow-io/nextflow/commit/f1ebe29a)] - Bump groovy 3.0.17 \[[`cfe4ba5`](https://togithub.com/nextflow-io/nextflow/commit/cfe4ba56)] - Bump gson:2.10.1 \[[`be55568`](https://togithub.com/nextflow-io/nextflow/commit/be555683)] - Bump micromamba:1.4.2 \[[`334df1e`](https://togithub.com/nextflow-io/nextflow/commit/334df1e0)] - Bump nf-wave@0.9.0 \[[`7d6d010`](https://togithub.com/nextflow-io/nextflow/commit/7d6d0108)] - Bump nf-tower@1.5.13 \[[`b06ffd0`](https://togithub.com/nextflow-io/nextflow/commit/b06ffd0c)] - Bump nf-google@1.7.4 \[[`2e0a15c`](https://togithub.com/nextflow-io/nextflow/commit/2e0a15cd)] - Bump nf-ga4gh@1.0.6 \[[`0c8fd7d`](https://togithub.com/nextflow-io/nextflow/commit/0c8fd7df)] - Bump nf-console@1.0.6 \[[`a733b81`](https://togithub.com/nextflow-io/nextflow/commit/a733b818)] - Bump nf-codecommit@0.1.5 \[[`12edf0e`](https://togithub.com/nextflow-io/nextflow/commit/12edf0e6)] - Bump nf-amazon@2.0.0 \[[`69b6edd`](https://togithub.com/nextflow-io/nextflow/commit/69b6edde)] - Bump nf-azure@1.1.0 \[[`d05d51b`](https://togithub.com/nextflow-io/nextflow/commit/d05d51b4)] ### [`v23.04.4`](https://togithub.com/nextflow-io/nextflow/releases/tag/v23.04.4): Version 23.04.4 - Fix use of GITHUB_TOKEN variable to access GitHub repo \[[`108c6b5`](https://togithub.com/nextflow-io/nextflow/commit/108c6b55)] - Fix allow_other vulnerability preventing google-batch submissions ([#4332](https://togithub.com/nextflow-io/nextflow/issues/4332)) \[[`4895d54`](https://togithub.com/nextflow-io/nextflow/commit/4895d547)] - Fix Prevent false positive resumable task \[[`aae8771`](https://togithub.com/nextflow-io/nextflow/commit/aae87715)] - Fix Always emit publish event for cached task outputs ([#4227](https://togithub.com/nextflow-io/nextflow/issues/4227)) \[[`c4cd53c`](https://togithub.com/nextflow-io/nextflow/commit/c4cd53c2)] - Fix Too long Http connection pool timeout \[[`ce5e993`](https://togithub.com/nextflow-io/nextflow/commit/ce5e9930)] - Bump nf-google@1.7.3-patch1 \[[`d881728`](https://togithub.com/nextflow-io/nextflow/commit/d881728c)]Configuration
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