quilt_sumarize.json: wrong path for child HTML files

[drernie]

Should include parent: multiqc/multiqc_report.html

expand_more
[
0: "README_NF_QUILT.md"
1: "multiqc_report.html"
]

Also, no longer see the nf_quilt directory files...

[drernie]

Replace String filename = path.getFileName() with relative path.

[drernie]

Ah, we capture the paths, but only keep the key name (instead the full value paths):

String qs_json = JsonOutput.toJson(quilt_summarize.keySet() as String[])

[drernie]

{
    "README_NF_QUILT.md": "README_NF_QUILT.md",
    "multiqc_report.html": "multiqc/multiqc_report.html"
}

[drernie]

never mind, nf-quilt there https://quilt-t4-staging.quiltdata.com/b/quilt-ernest-staging/packages/test/hurdat/tree/latest/nf-quilt/config.json