Output bam file with relocated anchored STR mates

quinlan-lab / STRling

Detect novel (and reference) STR expansions from short-read data

MIT License

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Output bam file with relocated anchored STR mates #28

Closed hdashnow closed 3 years ago

hdashnow commented 4 years ago

Optionally output a bam file where anchored mates containing mostly STR have been relocated to their approximate position.

hdashnow commented 3 years ago

This is partially implemented with the strling pull_region command to get pairs in a region. Could potentially do something more genome-wide, but no current use case.